Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0846 ATGGCCTCCCTCCCTTCTCTCTGCTATGGTGTTCCCCCCTCCCGCCCTTTCTTCTTCCTCTCCCTCCTCTTCCTCTCCCTTCTTCCATTCCACTCCGCCCAGAAATTCCCTTCCTCTTCCGTCTCCGGTCAGATTAACTCCAACTCTATTCTCGTTGCTCTTCTCGATTCCCATTATACTGAGCTCGCTGAGCTCGTGGAGAAAGCTCTTCTCCTTCAGAAACTCGAGGATACCGTCGGCTCCAACAATATCACCATCTTTGCCCCGCGGAATGAAGCTCTGGAGCGTCAGCTCGATCCCGAGTTTAGGCGTTTCCTGCTTGAACCTGGGAATCTCAGGTCCTTGCAGACCCTTCTCATGTATCACATTGTTCCCAGACGAATCGGTTCCAATGACTGGCCCTCTGAGAGTTCTGGAGCCGTTCCGCACAAGACCTTATGCAATGACCATGTGCATTTGGCCAGCAAGGGTCCTGCTAGTAACGTTGTTGGTTTGGCCGACATCGTTCGCCCCGACGACGTCGTTCGTCCTGATGGTGTGATTCACGGCATTGAGCGCCTTTTGGTCCCGCGATCGGTGCAGGAGGATTTCAATCGCCGACGGAATTTGCGGGACATATCGGCCGTGATCCCAGAGGGTGCGCCGGAGGTGGATCCCCGAACCCACCGGTTGAAGAAACCCGCTCCAGTACCCGCCGGCGCTCCTCCCGTGTTGCCCATTTACGACGCCATGGCCCCCGGTCCTTCACTCGCTCCCGCACCGGCCCCCGGACCCGGTGGTCCTCATGGTCACTTCAATGGTATGCGTCAGGTGAAAGATTTCATTCACACTCTTTTGCATTACGGTGGCTACAATGAAATGGCCGATATTCTGGTTAACTTGACATCTTTGGCCACCGAAATGGGAAGGTTAGTCTCAGAGGGTTATGTCCTGACGGTGTTGGCTCCCAACGACGAGGCCATGGCGAAGCTAACCACAGACCAATTGAGTGAACCGGGTGCACCGGAGCAAATAATATACTACCATATCATACCGGAGTATCAGACGGAGGAGAGTATGTACAATGCTGTGAGGAGGTTTGGGAAAATTCGGTACGACACACTGCGGTTGCCACACAAGGTTGTGGCTCAGGAGGCTGATGGGTCTGTGAAGTTTGGGCAAGGGGAAGGGTCTGCATATCTTTTTGATCCTGATATATATACAGATGGGAGAATTTCAGTACAGGGTATTGACGGAGTTCTTTTCCCGGCCGAAGAGGAGGCAAAGACTGAGCGAAAAACAGTACCAGTCGTCAAAGTGGCCGCCAAACCAAGGAGAGGGAAGTTGCTGGAAGTAGCTTGTAGCATGTTTGGAGCTTTTGGAGGATCCTGCTAA 1374 0.5342 MASLPSLCYGVPPSRPFFFLSLLFLSLLPFHSAQKFPSSSVSGQINSNSILVALLDSHYTELAELVEKALLLQKLEDTVGSNNITIFAPRNEALERQLDPEFRRFLLEPGNLRSLQTLLMYHIVPRRIGSNDWPSESSGAVPHKTLCNDHVHLASKGPASNVVGLADIVRPDDVVRPDGVIHGIERLLVPRSVQEDFNRRRNLRDISAVIPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPHGHFNGMRQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKIRYDTLRLPHKVVAQEADGSVKFGQGEGSAYLFDPDIYTDGRISVQGIDGVLFPAEEEAKTERKTVPVVKVAAKPRRGKLLEVACSMFGAFGGSC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0846 457 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 29 457 IPR044654 -
Lele06g0846 457 Gene3D FAS1 domain 50 191 IPR036378 -
Lele06g0846 457 ProSiteProfiles FAS1/BIgH3 domain profile. 46 188 IPR000782 -
Lele06g0846 457 ProSiteProfiles FAS1/BIgH3 domain profile. 271 399 IPR000782 -
Lele06g0846 457 FunFam Fasciclin-like arabinogalactan protein 16 266 417 - -
Lele06g0846 457 Gene3D FAS1 domain 269 417 IPR036378 -
Lele06g0846 457 SMART fasc_3 85 191 IPR000782 -
Lele06g0846 457 SMART fasc_3 312 417 IPR000782 -
Lele06g0846 457 Pfam Fasciclin domain 58 190 IPR000782 -
Lele06g0846 457 Pfam Fasciclin domain 296 415 IPR000782 -
Lele06g0846 457 SUPERFAMILY FAS1 domain 250 417 IPR036378 -
Lele06g0846 457 SUPERFAMILY FAS1 domain 48 191 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0846 Lele-ChrLele06 5252624 5255267 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0846 06 5252624 5255267 Lele06g0846 06 5252624 5255267 ECH
Lele06g0846 06 5252624 5255267 Lele07g1025 07 6164771 6167417 hybridization
Lele06g0846 06 5252624 5255267 Lele08g0837 08 5264607 5267235 hybridization