Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0728 ATGTTCACAGTTGGGCTCTGTTCGGACCGCATCTTCCACGTGTCTGAATCTGATTATACCGGAAGTTTGAAACTTGCTCGACCTTTAACACTGGACATGCTACCTCGCTTTTGTTTCTTCTTTGAATTCTCGGAGCTACTTCCAAAGACTTCGTTCCAGCGGCTGATATATACCGCTTTTATCTCGGAAATTGTTACTTGTCAGCTCTGTTCTTTATTCGCGAGGACCAATTCCGAGGCATTAGTGTTTCGGTGGAGGTTACTTCTTAGACCTTTTTATAATCTTTCTTCGGTGACAGACTTGCGGCTTTTATCTTCGAGAAGTTCCTTGGCTCACCAAGATTTTGCCATTTCCAGGAATGCTTGCCTTCAATTTTCTGTAGCCCGTACTTCATATATCTTCTTGCTTGCGCCTATATTTCTTATCACAAGGAGCAATAGACTGTTTGGTGTTTGTGAGGATACAGTACTCAGGTGTTCAAAGATGACAGTCACGCCAAAGATCTCCGTTAAAGATGGGAACCTGGTTGTCCATGGGAAAACCATACTGACTGGAGTACCAGATAACATCGTCCTGACCCCAGGATCTGGAGTGGGCCTTGTTGCTGGTGCCTTTATAGGTGCCACAGCTTCCCACAGCCAAAGTCTCCATGTCTTCCCCATGGGTATCTTAGAGGGCCTTCGTTTCATGTGCTGTTTCCGGTTCAAGTTATGGTGGATGACTCAGAGGATGGGAACTTGTGGGCGGGATATCCCTTTGGAGACCCAATTCATGCTGATAGAGAGCAAAAATGATGAAGCTGCTGATCAGGAGAATTCTCCAACCATCTACACTGTCTTGCTTCCTCTGCTGGAAGGCCCGTTCCGTGCTGTTCTACAAGGGAATGACAAAAATGAGATAGAGATTTGCCTTGAGAGTGGAGACAATGCTGTTGAGACGAGTCTAGGTCTTCACCTGTTGCCATCTTTTCTCGACTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACCGATGTCACGGCAGAGGGTGTCGAGGAAGGCCTGAAAAGGTTTACCACTAGGTTGACTGGTATAAAAGAAAACGCTAAATTTCAGAAGAATGGACAAAATACCGAACAGACTTCAGGCCTAAAGCATTTTGTAGATGAAGCGAAGCAACATCACAATTTGAAAGTCTCGCTCACAAGCAGCTACCACCAGGCCCTTGAGGCCTCTGTGGCTCGTAACTTTCCTGATAATGGATGCATTGCGTAAGGGATAACACTTCGGTTTCTGCAATTCCCTTTTGTATCTAATATTCTATTCATATTGACGGAAGAATCTTTACCATTTCAGAGTTTACACCCAGCAGCAGAGTACCATGCTGCAGCTCGTGCAGTTGGTGGATGTGCAATTTATGTCAGCTTGCTCAAAATATGGAACTTAAACAAATGCTCTGGAGTGGTTGGGATATTTAACTGTCAAGGTGCTGGGTGGTGCAAGATGGAGAAGAAGACTCGGATCCATGATGCATCTCCTGGTACACTCACAGGTTCTGTTCGTGCTTCTGATGTTGATCCAATCGCTCAAGTGGCTGGTGCCAATTGGGATGGCGACGTTATCGTTTATTCCTACAAAACAGGCGAGGTGATAAGGCTACCAAAAGATGCTTCAGTGCCGGTGACATTGCAAGTTTTGGAGTATGAACTATTTCATTTCTGTCCAGTGAAGAAAATTGGTCCAAGTATTTCGTTTGCAGCGATAGGGCTACTGGACATGCTCAACACTGGAGGAGCCGTTGAGCAGGTTGAATTCCACAAGGCTAGTGACAAAGAAGAACAAGTATTTGATGGGGAAGTTGAATCTGAGCTGACCGCTTGTCTCAGTTCGAAGCGATCAGCAACGGCGACTATTGCTCTCAAAGTGAGAGGAACTGGGAGATTCGGAGTGTACTCGTCGCAGCGGCCATTGAAGTGTGTTGTAGGAGAGGCCGAAACGGATTTGGATTTCGAATATGACTCGGCCACTGGGTTGGTCACCGTCACCATCCCACTTCCTTCTCAGGAAATGTACAGATGGCTCATACAAATCCAAGTTTGA 2079 0.4598 MFTVGLCSDRIFHVSESDYTGSLKLARPLTLDMLPRFCFFFEFSELLPKTSFQRLIYTAFISEIVTCQLCSLFARTNSEALVFRWRLLLRPFYNLSSVTDLRLLSSRSSLAHQDFAISRNACLQFSVARTSYIFLLAPIFLITRSNRLFGVCEDTVLRCSKMTVTPKISVKDGNLVVHGKTILTGVPDNIVLTPGSGVGLVAGAFIGATASHSQSLHVFPMGILEGLRFMCCFRFKLWWMTQRMGTCGRDIPLETQFMLIESKNDEAADQENSPTIYTVLLPLLEGPFRAVLQGNDKNEIEICLESGDNAVETSLGLHLLPSFLDWFGWCTWDAFYTDVTAEGVEEGLKRFTTRLTGIKENAKFQKNGQNTEQTSGLKHFVDEAKQHHNLKVSLTSSYHQALEASVARNFPDNGCIAXGITLRFLQFPFVSNILFILTEESLPFQSLHPAAEYHAAARAVGGCAIYVSLLKIWNLNKCSGVVGIFNCQGAGWCKMEKKTRIHDASPGTLTGSVRASDVDPIAQVAGANWDGDVIVYSYKTGEVIRLPKDASVPVTLQVLEYELFHFCPVKKIGPSISFAAIGLLDMLNTGGAVEQVEFHKASDKEEQVFDGEVESELTACLSSKRSATATIALKVRGTGRFGVYSSQRPLKCVVGEAETDLDFEYDSATGLVTVTIPLPSQEMYRWLIQIQV 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0728 692 Pfam Raffinose synthase or seed imbibition protein Sip1 168 318 IPR008811 -
Lele08g0728 692 Pfam Raffinose synthase or seed imbibition protein Sip1 320 352 IPR008811 -
Lele08g0728 692 Pfam Raffinose synthase or seed imbibition protein Sip1 468 675 IPR008811 -
Lele08g0728 692 Pfam Raffinose synthase or seed imbibition protein Sip1 391 418 IPR008811 -
Lele08g0728 692 PANTHER - 320 352 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0728 Lele-ChrLele08 4516224 4522396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0728 391 468 Glycoside Hydrolase AT3G57520 44.037 1.30e-14 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0728 08 4516224 4522396 Lele08g0728 08 4516224 4522396 ECH
Lele05g0873 05 5362462 5372345 Lele08g0728 08 4516224 4522396 hybridization
Lele06g0729 06 4485796 4496169 Lele08g0728 08 4516224 4522396 hybridization