Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0689 ATGCTCAGGACTTGCCCAACACACCCAAGCCTTCCGTTCCTCGGGTCTTTACTCTGTACAATCGGAGCCCTGTTCACTATAGCTTCACTGGGTAAGCCGTTGGAGGCACAGCGCCGTAAGGGTGGAAGCTCTGAAAATCAAAATGTCATCATTGACTCGCCTCAACACTTTCGCAAGACCTCTCTGCTCCTGCATCTCACGCCAGTTGAAGCTTCAGATTTTGAATGCGACCAGATCCATGAGGATGTGAAGGCAACAGAGAAAGATTCTGCACTATGCCTAGCTGTTTCACAGCTTGCTAGTGAGTTTACCAGGGAGTCTATGTTATCTTTGCAGAAGTTTTTTTGTACACATCGTGCACAAGCGATTTCTACAGGCTCCCTGAAGCTGGACCTAGCTCTTGGAGTTGGAGGGTTACCAAAGGGTAGAATTGTGGAAATTTATGAACGAGAAGCAGCTGTCAAGACAACACTTGCACTTCAAGTTGTAAAAGAAGCTCAGAAGCTTGAAGGATATTGTGCATATCTTGACGTAGAAAATGCATTGGACCTTTCACTTGTAGAATCAATTGGTGTAAATACTGAAAACCTTCTTGTCTCACATCCTGATTGTGCTGAAAACTTGTTGAGCATGGTGGATACATTGACGAAAAGTGGAGCTGTGGATGTGATTGTGATTGACAGTGTTGCTGCCCTGGTCCCAAAACTTGAACTTGATCAATTAGGAGTTGGCTATAAACGAGATTTACTGAAGCAATTAATGACTCAAGCGCTACGGAAAATTCATTACTCACTGTCTCACTCTCGAACTCTTATCATTTTCATTAATCAGGTTAGATTAAGTCCAAAATCAGGTCAGGCACATGGACCTGTTGAAGAGGTTACTTGTGGTGGAAATGCCTTAGGATTCTATGCAGCTGTACGCTTGAGACTTTCAAGAATGGGGCTGTTGAAAAATGATGATCAGCCGGAGGGTCTTGCAGTCTGCGCGCAGGTGGTAAAAAATAAACTGGCACCTGCAATGAAAAAGGCTGAATTAGGGATCAAGTTTGGAAGAGGATTTTGCCTTGAAACTGAGGTCTTAGAGTTGGCTTGTGAGCATGGAGCGATCCTGAAACATGGAGACAGATACCTTATCGAAGGTTTGGCTTTTGACAGTAAACGTGCAGCTGAACGTTATTTGGCTGAAAATGACGAGATTCTTGATAAATTGGTCGTGGACTTGAGGCAAGTTTTGTTTTAA 1242 0.438 MLRTCPTHPSLPFLGSLLCTIGALFTIASLGKPLEAQRRKGGSSENQNVIIDSPQHFRKTSLLLHLTPVEASDFECDQIHEDVKATEKDSALCLAVSQLASEFTRESMLSLQKFFCTHRAQAISTGSLKLDLALGVGGLPKGRIVEIYEREAAVKTTLALQVVKEAQKLEGYCAYLDVENALDLSLVESIGVNTENLLVSHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALVPKLELDQLGVGYKRDLLKQLMTQALRKIHYSLSHSRTLIIFINQVRLSPKSGQAHGPVEEVTCGGNALGFYAAVRLRLSRMGLLKNDDQPEGLAVCAQVVKNKLAPAMKKAELGIKFGRGFCLETEVLELACEHGAILKHGDRYLIEGLAFDSKRAAERYLAENDEILDKLVVDLRQVLF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0689 413 Gene3D - 118 410 IPR027417 -
Lele08g0689 413 PRINTS RecA protein signature 249 278 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lele08g0689 413 PRINTS RecA protein signature 177 206 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lele08g0689 413 PRINTS RecA protein signature 211 240 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lele08g0689 413 PRINTS RecA protein signature 330 359 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lele08g0689 413 PRINTS RecA protein signature 383 400 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lele08g0689 413 PRINTS RecA protein signature 297 325 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lele08g0689 413 ProSiteProfiles RecA family profile 1. 119 278 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lele08g0689 413 PANTHER RECA 75 412 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lele08g0689 413 ProSiteProfiles RecA family profile 2. 285 359 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lele08g0689 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 352 IPR027417 -
Lele08g0689 413 Pfam recA bacterial DNA recombination protein 91 354 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0689 Lele-ChrLele08 4241126 4245086 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0841 05 5128573 5132808 Lele08g0689 08 4241126 4245086 hybridization
Lele06g0691 06 4215589 4219586 Lele08g0689 08 4241126 4245086 hybridization