Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0576 ATGGAATCCATCGGCGTAGAGATAATCGGAGTGATGTCTCCTGTCTCCATCTGTATGTTCCTTGTTGTCCTCCTTGTCTATTCCCTCTCTTCCTCCAATCCCTTCTCTCCTGCTTCTGTCGATACCATTCGCACCGCTGCTAACCTCGTCTACGTCGAGAACCCTTCCGACTCTGCTTCCCAGAAGCTCGAAGGTGCTCTTCTTAATGCTCTGGTCTTCGTCATCTTAATTTCCATCGTCACTTTCCTCCTTGTCCTTCTTTACTATTACAACTTCACTAATTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCGTTCTTGGCACCATGGGCGGATCTATCCTCTTGTCCGTCATTCAGAAGTTCTCTATTCCTGTTGATTCCGTTACTTGTTTCCTTCTGCTTTTCAATTTCACTGTTGTCGGTGTTCTCTCCGTGTTTTCGGGTGGGATCCCAATTTTGCTGAGGCAAACCTACATGGTTTGTTTGGGGATTATTGTGGCTGCCTGGTTCACGAAATTGCCCGAGTGGACTACTTGGGTTTTGCTAGTCGCATTGGCTGTGTATGATTTGGTGGCTGTTTTGGCACCCGGTGGCCCGCTTAAGCTGTTGGTGGATTTGGCCTCAACTAGGGATGAAGAGCTCCCTGCCTTGGTGTACGAGGCTCGACCCACGGTTGCTCGAACTGGGAATCGCGGAGCCTCGGGTTTAGGGCTTTTGGTCGCTGGAGTTTCAGATTCTTCGTCAATTGAGCTACAAGCGGCGTCAAGGGACAACGTCAATAGAAATGAGAACGAGGGTCGCAGTAATGCCGACTATTCTGCAGTGACCTTGGGGGATTTTCAGAATGAGGAGGACCATAGTGACAGAGATGATGGGGAGAGGTCGCCGCTGGTGGGTAATGCACGAGAAAGGCATTCATTAAGTAGTGATTCATCGCAGTATTCTGTGGTTATCGGTCCATCCAGTCAAGGTCAGCAATTTAATAGCAGGGGCCATGAAATTGTTGGTGAGGAAACGTCTCCCCTTGTAGAAATTATGGAAATGGGGAATGAAGGAAGGCAGACGAGAGTTGGTGATGTGGAGATTGCTGATAGGGGTATTAAACTTGGTCTTGGCGACTTTGTTTTCTACAGTGTCCTTGTGGGTAGAGCTGCAATGTATGACCTTATGACAGTGTATGCCTGTTACCTTGCAATTATATCAGGACTAGGTTGCACTCTAATTTTGTTGTCAGTGTGCCGTCGAGCTCTGCCTGCACTTCCTATTTCTATCACACTGGGTGTTATCTTTTACTTCTTGACACGACTATTAATGGAACCCTTCATTGTTGGGGCAGCCACAAATCTAATGATGTTTTGA 1365 0.4762 MESIGVEIIGVMSPVSICMFLVVLLVYSLSSSNPFSPASVDTIRTAANLVYVENPSDSASQKLEGALLNALVFVILISIVTFLLVLLYYYNFTNFLKNYMRFSAFFVLGTMGGSILLSVIQKFSIPVDSVTCFLLLFNFTVVGVLSVFSGGIPILLRQTYMVCLGIIVAAWFTKLPEWTTWVLLVALAVYDLVAVLAPGGPLKLLVDLASTRDEELPALVYEARPTVARTGNRGASGLGLLVAGVSDSSSIELQAASRDNVNRNENEGRSNADYSAVTLGDFQNEEDHSDRDDGERSPLVGNARERHSLSSDSSQYSVVIGPSSQGQQFNSRGHEIVGEETSPLVEIMEMGNEGRQTRVGDVEIADRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVIFYFLTRLLMEPFIVGAATNLMMF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0576 454 MobiDBLite consensus disorder prediction 304 335 - -
Lele08g0576 454 Pfam Presenilin 5 444 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele08g0576 454 PRINTS Presenilin family signature 12 22 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele08g0576 454 PRINTS Presenilin family signature 174 181 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele08g0576 454 PRINTS Presenilin family signature 191 208 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele08g0576 454 MobiDBLite consensus disorder prediction 283 302 - -
Lele08g0576 454 SMART psh_8 64 440 IPR006639 GO:0004190|GO:0016020
Lele08g0576 454 Gene3D Presenilin 348 445 IPR042524 -
Lele08g0576 454 MobiDBLite consensus disorder prediction 283 335 - -
Lele08g0576 454 FunFam Presenilin 347 445 - -
Lele08g0576 454 PANTHER PRESENILIN 2 454 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0576 Lele-ChrLele08 3475894 3477258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0576 1 454 Miscellaneous Gene Families AT1G08700 65.953 0.0 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0576 08 3475894 3477258 Lele08g0576 08 3475894 3477258 ECH
Lele05g0735 05 4315042 4316334 Lele08g0576 08 3475894 3477258 hybridization
Lele06g0570 06 3427837 3429201 Lele08g0576 08 3475894 3477258 hybridization