Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0570 ATGGAATCCATCGGCGTAGAGATAATCGGAGTGATGTCTCCTGTCTCCATCTGTATGTTCCTTGTTGTCCTCCTTGTCTATTCTCTCTCTTCCTCCAATCCCTTCTCTCCTTCTTCTGTCGATACCATTCGCACCGCTGCTAACCTCGTCTACGTCGAGAACCCTTCCGACTCTGCTTCCCAGAAGCTCGAAGGTGCTCTTCTTAATGCTTTGGTCTTCGTCATCTTAATTTCCATCGTCACTTTCCTCCTTGTCCTTCTTTACTATTACAACTTCACTAATTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCGTTCTTGGCACCATGGGCGGATCCATCCTCTTGTCCGTCATTCAGAAGTTCTCTATTCCTGTTGATTCCGTTACTTGTTTCCTTCTGCTTTTCAATTTCACTGTTGTCGGTGTTCTCTCCGTGTTTTCGGGTGGGATCCCAATTTTGCTGAGGCAAACCTACATGGTTTGTTTGGGGATTATTGTGGCTGCCTGGTTCACGAAATTGCCAGAGTGGACTACTTGGGTTTTGCTAGTCGCATTGGCTGTGTATGATTTGGTGGCTGTTTTGGCACCCGGTGGCCCGCTTAAGCTGTTGGTGGATTTGGCCTCAACTAGGGATGAGGAGCTCCCTGCCTTGGTGTACGAGGCTCGACCCACGGTTGCTCGAACTGGGAATCGCGGAGCCTCGGGTTTAGGGCTTTTGGTCGCTGGAGTTTCAGATGCTTCGTCAATCGAGCTACAAGCGGCTTCAAGGGACAACGCCAATAGAAATGAGAACGAGGGTCGCAGTAATGCCGACTATTCTGCAGTGACCTTGGGGGATTTTCAGAATGAGGAGGATCATAGTGACAGAGATGATGGGGAGAGGTCGCCGCTGGTGGGTAATGCACGAGAAAGGCGTTCATTAAGTAGTGATTCATCGCAGTATTCTGTGGTTATCGGTCCATCCAGTCAAGGTCAGCAATTTAATAGCAGGGACCATGAAATTGTTAGTGAGGAAACGTCTCCCCTTGTAGAAATGATGGAAATGGGGAATGAAGGAAGGCAGACGAGGGTTGGTGATGTGGAGATTGCTGATAGGGGTATTAAACTTGGTCTTGGCGACTTTGTTTTCTACAGTGTCCTTGTGGGTAGAGCTGCAATGTATGACCTTATGACAGTGTATGCCTGTTACCTTGCAATTATATCAGGCCTAGGTTGCACTCTAATTTTGTTGTCAGTGTGCCGTCGAGCTCTGCCTGCACTTCCTATTTCTATCACACTGGGTGTTATCTTTTACTTCTTGACACGACTATTAATGGAGCCCTTCATTGTTGGGGCAGCCACAAATCTAATTATGTTTTGA 1365 0.4769 MESIGVEIIGVMSPVSICMFLVVLLVYSLSSSNPFSPSSVDTIRTAANLVYVENPSDSASQKLEGALLNALVFVILISIVTFLLVLLYYYNFTNFLKNYMRFSAFFVLGTMGGSILLSVIQKFSIPVDSVTCFLLLFNFTVVGVLSVFSGGIPILLRQTYMVCLGIIVAAWFTKLPEWTTWVLLVALAVYDLVAVLAPGGPLKLLVDLASTRDEELPALVYEARPTVARTGNRGASGLGLLVAGVSDASSIELQAASRDNANRNENEGRSNADYSAVTLGDFQNEEDHSDRDDGERSPLVGNARERRSLSSDSSQYSVVIGPSSQGQQFNSRDHEIVSEETSPLVEMMEMGNEGRQTRVGDVEIADRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVIFYFLTRLLMEPFIVGAATNLIMF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0570 454 FunFam Presenilin 346 445 - -
Lele06g0570 454 SMART psh_8 64 440 IPR006639 GO:0004190|GO:0016020
Lele06g0570 454 PRINTS Presenilin family signature 12 22 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele06g0570 454 PRINTS Presenilin family signature 174 181 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele06g0570 454 PRINTS Presenilin family signature 191 208 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele06g0570 454 MobiDBLite consensus disorder prediction 283 334 - -
Lele06g0570 454 MobiDBLite consensus disorder prediction 283 302 - -
Lele06g0570 454 PANTHER PRESENILIN 2 454 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele06g0570 454 Pfam Presenilin 5 444 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele06g0570 454 Gene3D Presenilin 347 445 IPR042524 -
Lele06g0570 454 MobiDBLite consensus disorder prediction 304 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0570 Lele-ChrLele06 3427837 3429201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0570 1 454 Miscellaneous Gene Families AT1G08700 65.812 0.0 568
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0570 06 3427837 3429201 Lele06g0570 06 3427837 3429201 ECH
Lele06g0570 06 3427837 3429201 Lele07g0770 07 4387135 4388427 hybridization
Lele06g0570 06 3427837 3429201 Lele08g0576 08 3475894 3477258 hybridization