Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0532 ATGCGCAAAGGTCAATATGATGTGAGTTGGTGCACAGCTGGAATACCCACCAATCATGCCAATTCCAATTCTTCGATTCGGAAAAGCAATGGGAAGATCCCAAGTATTTTTGACCAGAAGGAAAAGAATCAGCATCGCGAGCTGTTTCTTTCCTTCGCCCTTCACTGCTCGCACCCTCGGCCAGGGAACTTGACAAACTCTGCATTCAAAATCAAAGTAGTAATAGTTGTTGCGGTGATAATTACATATAGTGCTACTACTCACTACTCAGTCATCGCAATGCAGACAAGGTCGGTTCAAGTAAAGAATGTTTCAGATCTAGCTACTGAGAGGGAGATTCACGAATTTTTCTCGTTTTCTGGAGAAATCGAGCACATTGAGATCCAAAGTGAATCCGGGAAATTAAAGACAGCATATGTGACATTTAAAGATCCAAAGGCGCTTGAGATTGCGTTATTGTTGTCGGGAGCGACAATAGTAGATCGGATTGTGAGTATAACTCCAGCTGAGAACTATGCACCGAAACAAGAGATGCAGGAAGTAATGGTGGTGGCAAATGCTACAAATGTTGCTCCTGTTGAAAATATTACACCAAATGTTGAGGAGAAAGCAAACCCCACTGGCAGTGGAAGAATATATATTAATAGAGCACAAGATGTAGTCACAAGTATGCTCGCTAAAGGTTCAGCAATTAGACAAGATGCCTTGAATAAAGCTAAAGCGTTTGATGAAAAGCATCAGTTTACTGCCAATGCGTCTTCTAAGGTTGCTTCTTTTGACAAGAGGGTTGGTCTTTCAGAGAAATTGACAGTTGGCATTTCTGTAGTTAATGAGAAGGTGAAGTATGTTGATCAGAGGCTTCATGTTTCAGATAAAACAATGGCCGCAATACTAGCAGCTGAGAGGAAGTTAAATGATACTGGATCAGCGGTCAAAACAAGCAGATATGTGACTGCTGGAACAACATGGTTAAATGGTGCTTTTGGTAAGGTGGCAAGGGCTGGACAACTTGCCGGTACGAAAACTAGAGAAAAGTTCCATTTGGCTGTATCTAACTTGACTTCGAAGAAGGGAAAATTCTTAAATACATGTAGTAGCTGTGCATGTGCATTGATTGTTACACATGAAATTGGTATAAACGTGATTTCATCCATCAATGCAGGAGCCACCAGTTGCTGCATAAACCAGAAATTGGTATTCATCGGTCACATCAAGAAATCTCTTGAAATCATGATATGTTTTTTGGAACATGTTGCTACGTCAAGCTGTTTGGCCTTTGAAATGGAGACGCTGAGGTGCAGAACAGAACAGGAGGAGAGATGGGAAGGCGCTGGTTCCTGTGTTGGTCGGTCTTCCTAA 1359 0.4187 MRKGQYDVSWCTAGIPTNHANSNSSIRKSNGKIPSIFDQKEKNQHRELFLSFALHCSHPRPGNLTNSAFKIKVVIVVAVIITYSATTHYSVIAMQTRSVQVKNVSDLATEREIHEFFSFSGEIEHIEIQSESGKLKTAYVTFKDPKALEIALLLSGATIVDRIVSITPAENYAPKQEMQEVMVVANATNVAPVENITPNVEEKANPTGSGRIYINRAQDVVTSMLAKGSAIRQDALNKAKAFDEKHQFTANASSKVASFDKRVGLSEKLTVGISVVNEKVKYVDQRLHVSDKTMAAILAAERKLNDTGSAVKTSRYVTAGTTWLNGAFGKVARAGQLAGTKTREKFHLAVSNLTSKKGKFLNTCSSCACALIVTHEIGINVISSINAGATSCCINQKLVFIGHIKKSLEIMICFLEHVATSSCLAFEMETLRCRTEQEERWEGAGSCVGRSS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0532 452 SMART rrm1_1 98 167 IPR000504 GO:0003723
Lele08g0532 452 CDD RRM_Vip1_like 99 167 IPR034360 -
Lele08g0532 452 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 95 349 - -
Lele08g0532 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 171 IPR000504 GO:0003723
Lele08g0532 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 161 IPR000504 GO:0003723
Lele08g0532 452 Gene3D - 84 181 IPR012677 -
Lele08g0532 452 SUPERFAMILY RNA-binding domain, RBD 86 177 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0532 Lele-ChrLele08 3233546 3238570 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0695 05 4106958 4115520 Lele08g0532 08 3233546 3238570 hybridization
Lele06g0528 06 3185705 3190874 Lele08g0532 08 3233546 3238570 hybridization