Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0528 ATGCAGCAAACAACAAGTCATGGTACTCCATGCGCAAAGGTCAATACGATGTGTGTTGGTGCACAGCTGGAGCACCCACCGATCATGGCCATTCCGCGAGCTCTTTCTTTCCTTCGCCCTTTTCTGCTCGCACCTCGGCCAGGGAACTTGACGAACTCTGCATTCAAAATCAAAATAGTAATAGTTGTTGCGGTGCGAATTACATATACTTCTACTACTCAGCCATCGCAATGCAGACACTCAAAGTTCTTCTCTATCTGGGTTTTACAGACAAGGTCGGTTCAAGTAAAGAATGTTTCAGATCTAGCTACTGAGAGGGAGATTCACGAATTTTTCTCGTTTTCTGGAGAAATCGAGCACATTGAGATCCAAAGTGAATCCGGGAAATTAAAGACAGCATATGTGACATTTAAAGATCCAAAGGCGCTTGAGATTGCGTTATTGTTGTCGGGAGCGACAATAGTAGATCGGATTGTGAGTATAACTCCAGCTGAGAACTATGTACCGAAACAAGAGATGCAGGAAGTAATGGTGGTGGCAAATGCTACAAATGTTGCTGCTGTTGAAAATATTACACCAAATGTTGAGGAGAAAGCAAACCCCACTGGCAGTGGGAGAATGTATATTAATAGAGCACAAGATGTAGTCACAAGTATGCTCGCTAAAGGTTCATCAATTAGACAAGATGCCTTGAATAAAGCTAAAGCGTTTGATGAAAAGCATCAGTTTACTGCCAATGCGTCTTCTAAGGTTGCTTCTTTTGACAAGAGGGTTGGTCTTTCAGAGAAATTGACAGTTGGCATTTCTGTAGTTAATGAGAAGGTGAAGTATGTTGATCAGAGGCTTCATGTTTCAGATAAAACAATGGCCGCAATACTAGCAGCTGAGAGGAAGTTAAATGATACTGGATCAGCGGTCAAAACAAGCAGATATGTGACTGCTGGAACAACATGGTTAAATGGTGCTTTTGGTAAGGTGGCAAGGGCTGGACAACTTGCCGGTACGAAAACTAGAGAAAAGTTCCATTTGGCTGTATCTAACTTGACTTCGAAGGTCAAGAAATCTCTTGAAATCATGATGTGTTTTTTGGAACATGTTGCTACGTCAAGCTGTTTGGCCTTTGAAATGGAGACGCTGAGGTGCAGAACAGAACAGGAGGAGAGATGGGAAGGCGCTGGTTTCTTTGTTGGTCGGTCTTCCTAA 1203 0.4289 MQQTTSHGTPCAKVNTMCVGAQLEHPPIMAIPRALSFLRPFLLAPRPGNLTNSAFKIKIVIVVAVRITYTSTTQPSQCRHSKFFSIWVLQTRSVQVKNVSDLATEREIHEFFSFSGEIEHIEIQSESGKLKTAYVTFKDPKALEIALLLSGATIVDRIVSITPAENYVPKQEMQEVMVVANATNVAAVENITPNVEEKANPTGSGRMYINRAQDVVTSMLAKGSSIRQDALNKAKAFDEKHQFTANASSKVASFDKRVGLSEKLTVGISVVNEKVKYVDQRLHVSDKTMAAILAAERKLNDTGSAVKTSRYVTAGTTWLNGAFGKVARAGQLAGTKTREKFHLAVSNLTSKVKKSLEIMMCFLEHVATSSCLAFEMETLRCRTEQEERWEGAGFFVGRSS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0528 400 SUPERFAMILY RNA-binding domain, RBD 83 171 IPR035979 GO:0003676
Lele06g0528 400 SMART rrm1_1 93 162 IPR000504 GO:0003723
Lele06g0528 400 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 91 344 - -
Lele06g0528 400 Gene3D - 88 177 IPR012677 -
Lele06g0528 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 166 IPR000504 GO:0003723
Lele06g0528 400 CDD RRM_Vip1_like 94 162 IPR034360 -
Lele06g0528 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0528 Lele-ChrLele06 3185705 3190874 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0528 06 3185705 3190874 Lele07g0738 07 4154941 4166139 hybridization
Lele06g0528 06 3185705 3190874 Lele08g0532 08 3233546 3238570 hybridization