Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0695 ATGCAGACAAGGTCGGTTCAAGTAAAGAATGTCTCGGATCTAGCTACTGAGAGGGAGATTCACGAATTTTTCTCGTTTTCTGGAGAAATCGAGCACATTGAGATCCGAAGTGAATCCGGGAAATTAAAGACAGCATATGTGACATTTAAATATCCAAAGGCGCTTGAGATCGCGTTATTGTTATCGGGAGCGACAATAGTAGATCAGATTGTGAGTATAACTCCAGCTGAGAACTATGTACCGAAACAAGAGATGCAGGAAGTAATGGTGGTGGCAAATGCAACAAATGTTGCTCCTGTTGAAAATATTACACCAAATGTTGAGGAGAAAGCAAACCCCACTGGCAGTGGAAGAATGTATATTAGTAGAGCACAAGATGTAGTCACAAGTATGCTCGCTAAAGGTTCAGCAATTAGACAAGATGCCTTGAATAAAGCTAAAGCATTCGATGAAAAACATCAGTTTACTACCAATGCGTCTGCTAAGGTTGCTTCTTTTGACAAGAGGGTTGGTCTTTCAGACAAATTGACAGTTGGCATTTCTGTAGTTAATGAGAAGGTGAAGCATGTTGATCAGAGGCTTCATGTTTCAGATAAAACAATGGCCGCAATACTAGCAGCTGAGAGGAAGTTAAATGATACTGGATCAGCGGTCAAAACAAGCAGATGTGTGAGTGCTGGAACGACATGGTTAAATGGCGCTTTTGGTAAGGTGGCAAGGGCTGGACAACTTGCCGGTACGAAAACTAGAGAAAAGTTCCATTTGGCTGTATCTAACTTGACAGCAAAGCAGTTTGTTTCATGTGGCAAGTGTTGTGATTGTGCTTTATTCTTTTGTCACTATGGTTTGTCGATGTTGCTTCTTTGTAATTTCAGCAGTGGTAATTCTGGTTTTCATGTGAAAAGGAAAATTGCAGATGCAATGAACCACATCCCCATTGTCAGGAGGCTTCTTGCAGCTGGTGCAGACCCTGATGCTCGAGTAGGAGGTTACTTGGTTTTCTTAGATTTAGTACATCATCTCAGTCAGTTCTCCCCTATTTTTGTGGTCTTACTGAATGCTTATGCTAGAAAGATACATCCTTCACCTGGGGCCTCGATTACAATGGAGGACTATAAATCTCGAGTACCTGTAGATCTCTTATCTGGCCCTGTGTTTCAGGCCTTTAGAACTGAATGTGATTCAGGCATGAATTGCTGTGCTTTGACTACTTTGTAA 1218 0.4163 MQTRSVQVKNVSDLATEREIHEFFSFSGEIEHIEIRSESGKLKTAYVTFKYPKALEIALLLSGATIVDQIVSITPAENYVPKQEMQEVMVVANATNVAPVENITPNVEEKANPTGSGRMYISRAQDVVTSMLAKGSAIRQDALNKAKAFDEKHQFTTNASAKVASFDKRVGLSDKLTVGISVVNEKVKHVDQRLHVSDKTMAAILAAERKLNDTGSAVKTSRCVSAGTTWLNGAFGKVARAGQLAGTKTREKFHLAVSNLTAKQFVSCGKCCDCALFFCHYGLSMLLLCNFSSGNSGFHVKRKIADAMNHIPIVRRLLAAGADPDARVGGYLVFLDLVHHLSQFSPIFVVLLNAYARKIHPSPGASITMEDYKSRVPVDLLSGPVFQAFRTECDSGMNCCALTTL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0695 405 SMART rrm1_1 5 74 IPR000504 GO:0003723
Lele05g0695 405 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Lele05g0695 405 Gene3D - 1 89 IPR012677 -
Lele05g0695 405 CDD RRM_Vip1_like 6 74 IPR034360 -
Lele05g0695 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Lele05g0695 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Lele05g0695 405 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 3 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0695 Lele-ChrLele05 4106958 4115520 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0695 05 4106958 4115520 Lele07g0738 07 4154941 4166139 hybridization
Lele05g0695 05 4106958 4115520 Lele08g0532 08 3233546 3238570 hybridization