Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0399 ATGGGAGTGACCCCAAAGATTGCACCCTCCATGCTGTCATCGGACTTTGCTAATTTAGCTTCCGAGGCTGCTCGCATGCTCAACGATGGCGCCGATTGGCTCCACATGGATATTATGGGTCCTATAATAATTATCAGGGCATATCTGGACTGCCACCTGATGGTCACAAATCCTCTTGACTATGTTGAACCTTTGAGAAAGGCTGGGGCTTCTGGTTTTACATTTCATATAGAGACATCTAAAGATAATTGGTCAGAACTTGTCTGGAGAATTAAATCAGGGGGCATGACGCCTGGTGTAGCATTAAAGCCTGGGACACCAGTTGAAGTGATTTATCCTCTGGTTGAAGCAGAAAATCCTGTGGAATTGGTCCTTGTTATGACTGTGGAACCTGGATTTGGAGGACAGAAATTTATGCCTGAGACGATGGATAAGGTACGGCTGCTAAGGCTGAAGTATCCATCACTTAACATTGAGGTTGATGGTGGACTAGGGCCTTCAACCATTGATACAGCCGCATCTGCAGGAGCAAACTGCATTGTTGCAGGAAGCTCAGTATTTGGAGCCCCTGAGCCAGCTCAAGTAATATCCTTGATGAGGAAGAGTGTTGAGAAAGCCCAGCAAACAAGCTGA 633 0.4629 MGVTPKIAPSMLSSDFANLASEAARMLNDGADWLHMDIMGPIIIIRAYLDCHLMVTNPLDYVEPLRKAGASGFTFHIETSKDNWSELVWRIKSGGMTPGVALKPGTPVEVIYPLVEAENPVELVLVMTVEPGFGGQKFMPETMDKVRLLRLKYPSLNIEVDGGLGPSTIDTAASAGANCIVAGSSVFGAPEPAQVISLMRKSVEKAQQTS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0399 210 CDD RPE 6 200 IPR000056 GO:0005975|GO:0016857
Lele08g0399 210 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 5 208 IPR000056 GO:0005975|GO:0016857
Lele08g0399 210 Gene3D Aldolase class I 1 210 IPR013785 -
Lele08g0399 210 Pfam Ribulose-phosphate 3 epimerase family 6 187 IPR000056 GO:0005975|GO:0016857
Lele08g0399 210 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 124 146 IPR000056 GO:0005975|GO:0016857
Lele08g0399 210 SUPERFAMILY Ribulose-phoshate binding barrel 5 205 IPR011060 -
Lele08g0399 210 FunFam ribulose-phosphate 3-epimerase isoform X2 43 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0399 Lele-ChrLele08 2453040 2455855 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0399 08 2453040 2455855 Lele08g0399 08 2453040 2455855 ECH
Lele05g0571 05 3349028 3353982 Lele08g0399 08 2453040 2455855 hybridization
Lele06g0393 06 2403918 2406709 Lele08g0399 08 2453040 2455855 hybridization