Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0571 ATGGTCCCAAACCTCCATCCACCGTTTGCAAAGGTCTCCGATCAAAAGACACTTCAGTCAGAACACAAGAGGTTGATGATTGAAGACGGTGATTTCGAATCACCTGAGCTTATAACTCCGAATCAGAGGCAAACAAGAGTTCGATCGGTGCACGAGAGGACATGGATTTCCCAATGGCGTCCGATCTTCAATCCAGAATTCGTGGAAATTACGAAATCTAAGAGCAGCGCAATCATGGGAGTGACGCCAAAAATTGCACCCTCCATGCTATCATCGGACTTCGCTAATTTAGCTTCCGAGGCTGCTCGCATGCTCAACGATGGCGCCGATTGGCTCCACATGGATATTATGAAAGCATTGTTTTTCTTGCACTTTGTCCCCAATCTAACCATTGGTGCTCCAGTCATTGAAAGCTTAAAAAAGCACACAAAGGCATATCTGGACTGCCACCTGATGGTCACAAATCCTCTTGACTATGTTGAACCTTTGAGAAAGGCTGGTGCTTCTGGTTTTACATTTCATATAGAGACATCTAAAGATAATTGGCCCGAACTTGTCCAGAGAATTAAATCAGGGGGCATGACGCCTGGTGTAGCATTAAAGCCTGGGACACCAGTTGAAGAGATTTATCCTCTGATTGAAGCAGAAAATCCAGTGGAATTGGTCCTTGTGATGACTGTGGAACCCGGATTTGGAGGACAGAAATTTATGCCTGAGACGATGGATAAGGTACGGCTGCTAAGGCAGAAGTATCCATCACTTAACATTGAGGTTGATGGTGGACTAGGGCCTTCGACCATTGATACGGCCGCATCTGCAGGAGCAAACTGCATTGTTGCGGGAAGCTCAGTATTCGGAGCCCCCGAGCCAGCTCAAGTAATATCCTTGATGAGGAAGAGCGTTGAGAATGCCCAACAAACAAACTGA 927 0.4639 MVPNLHPPFAKVSDQKTLQSEHKRLMIEDGDFESPELITPNQRQTRVRSVHERTWISQWRPIFNPEFVEITKSKSSAIMGVTPKIAPSMLSSDFANLASEAARMLNDGADWLHMDIMKALFFLHFVPNLTIGAPVIESLKKHTKAYLDCHLMVTNPLDYVEPLRKAGASGFTFHIETSKDNWPELVQRIKSGGMTPGVALKPGTPVEEIYPLIEAENPVELVLVMTVEPGFGGQKFMPETMDKVRLLRQKYPSLNIEVDGGLGPSTIDTAASAGANCIVAGSSVFGAPEPAQVISLMRKSVENAQQTN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0571 308 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 83 306 IPR000056 GO:0005975|GO:0016857
Lele05g0571 308 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 222 244 IPR000056 GO:0005975|GO:0016857
Lele05g0571 308 TIGRFAM rpe: ribulose-phosphate 3-epimerase 84 298 IPR026019 GO:0004750|GO:0006098
Lele05g0571 308 Hamap Ribulose-phosphate 3-epimerase [rpe]. 82 300 IPR026019 GO:0004750|GO:0006098
Lele05g0571 308 Gene3D Aldolase class I 78 308 IPR013785 -
Lele05g0571 308 SUPERFAMILY Ribulose-phoshate binding barrel 83 303 IPR011060 -
Lele05g0571 308 FunFam Ribulose-phosphate 3-epimerase 79 308 - -
Lele05g0571 308 CDD RPE 84 298 IPR000056 GO:0005975|GO:0016857
Lele05g0571 308 Pfam Ribulose-phosphate 3 epimerase family 84 285 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0571 Lele-ChrLele05 3349028 3353982 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0571 05 3349028 3353982 Lele05g0571 05 3349028 3353982 ECH
Lele05g0571 05 3349028 3353982 Lele07g0598 07 3409565 3412410 hybridization
Lele05g0571 05 3349028 3353982 Lele08g0399 08 2453040 2455855 hybridization