Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0393 ATGGGGTTGACACCAAAGATTGCACCCTCCATGCTGTCATCGGACTTTGCTAATTTAGCTTCCGAGGCTGCTCGCATGCTCAACGATGGCGCCGATTGGCTCCACATGGATATTATGGTGTCCGTGTTTGCTCTCACCACATTATCACTGTGCCTTTTCCTTGTTACTCTTGACTGGTCCTATAATAATTATCTGGCGTGCTTAGTCTGTCGGCTTATAGTTCAAGTTTTCTCGGCTAAGAAGCACTTTGTCCCCAATCTAACCATTGGTGCTCCAGTCATTGAAAGCTTAAGAAAGCACACAAAGGCATATCTGGACTGCCACCTGATGGTCACAAATCCTCTTGACTATGTTGAACCTTTGAGAAAGGCTGGTGCTTCTGGTTTTACATTTCATATAGAGACATCTAAAGATAATTGGCCAGAACTTGTTCGTAAAATTAAATCAGGGGGCATGACTCCTGGTGTAGCATTAAAGCCTGGGACACCAGTTGAAGTGATTTATCCTCTGGTTGAAGCAGAAAATCCTGTGGAATTGGTCCTTGTGATGACTGTGGAACCTGGATTTGGAGGACAGAAATTTATGCCTGAGACAATGGATAAGGTACGGCTTCTAAGGCAGAAGTATCCATCACTTAACATTGAGGTATTTCAGCCTGTTAATTTCTCGGCTGTTGATGGTGGACTAGGGCCTTCAACCATTGATACTGCCGCATCTGCAGGAGCAAACTGCATTGTTGCAGGAAGCTCAGTATTTGGAGCCCCTGAGCCAGCTCAAGTAATATCCTTGATGAGGAAGAGTGTCGAGAAAACCCAGCAAACAAGCTGA 828 0.4505 MGLTPKIAPSMLSSDFANLASEAARMLNDGADWLHMDIMVSVFALTTLSLCLFLVTLDWSYNNYLACLVCRLIVQVFSAKKHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLRKAGASGFTFHIETSKDNWPELVRKIKSGGMTPGVALKPGTPVEVIYPLVEAENPVELVLVMTVEPGFGGQKFMPETMDKVRLLRQKYPSLNIEVFQPVNFSAVDGGLGPSTIDTAASAGANCIVAGSSVFGAPEPAQVISLMRKSVEKTQQTS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0393 275 PIRSF RPE 73 275 IPR026019 GO:0004750|GO:0006098
Lele06g0393 275 PIRSF RPE 2 56 IPR026019 GO:0004750|GO:0006098
Lele06g0393 275 Gene3D Aldolase class I 2 275 IPR013785 -
Lele06g0393 275 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 180 202 IPR000056 GO:0005975|GO:0016857
Lele06g0393 275 SUPERFAMILY Ribulose-phoshate binding barrel 4 269 IPR011060 -
Lele06g0393 275 CDD RPE 6 265 IPR000056 GO:0005975|GO:0016857
Lele06g0393 275 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 5 273 IPR000056 GO:0005975|GO:0016857
Lele06g0393 275 Pfam Ribulose-phosphate 3 epimerase family 81 252 IPR000056 GO:0005975|GO:0016857
Lele06g0393 275 Pfam Ribulose-phosphate 3 epimerase family 6 43 IPR000056 GO:0005975|GO:0016857
Lele06g0393 275 FunFam ribulose-phosphate 3-epimerase isoform X2 66 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0393 Lele-ChrLele06 2403918 2406709 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0393 06 2403918 2406709 Lele06g0393 06 2403918 2406709 ECH
Lele06g0393 06 2403918 2406709 Lele07g0598 07 3409565 3412410 hybridization
Lele06g0393 06 2403918 2406709 Lele08g0399 08 2453040 2455855 hybridization