Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0230 ATGGCTGTGGTTGCAGGTGCTCTGCACCACCACTTGCTCTATTCGTCGAAATGGAAGATCATCACTTCAACCTCACTGCACAGACCCGTTCTTTTAAGTTCAAGAAAGAAGGCTCAATCGTTTTTCATTTCCTGCTCTTCTTCCTCGTCTTCTACTTCACAGACTCCAGAAGCAAACACTGAAACCCCGGAATATTGCGTCAATCTCGGACTCGAACTCTTCTCCAAAGGACGGGTTAAAGATGCTTTGGTCCAGTTTGAAACTGCTCTATCTTTGAACCCCAATCCCATGGAAGCCCAAGCTGCGCTTTATAATAAAGCTTGCTGCCACGCATACAGAGGGGAAGGAAAGAAAGCAGCTGATTGTCTGCGCACAGCTCTGAAGGAATACAACCTAAAATTTGGTACCATTCTCAATGATCCGGACTTGGCCTCTTTAAGAGCTTTGCCTGAATTCAAGCAACTACAGGAAGAGGCCAGGCTAGGCGGTGAAGATATTGGCTACAGTTTTCGGAGAGACTTAAAAGTTATTAGTGAAGTTCAAGCACCATTCCGTGGAATTAGGAGATTCTTCTATATAGCATTTACTGCAGCTGCAGGAATTTCTACATTCTTTACTGCACCCAGGCTATTTCGTGCTATTAAAGGGGGCGATGATGCTCCTGATCTTTGGGAAACTGCTGGGAATGCCGCTATCAACATTGGAGGTATCATTGTTCTTGTGGCATTATTCTTATGGGATAATAAAAAGGAAGAGGAACAACTTGCACAGATATCACGAAATGAGACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAGTCGCATAGTAGAACTCGTGCAGCTACGGGACACAGTTAGACCAGTTATATTAGCAGGGAAAAAAGAATCAGTATCTCTGGCTTTGCAAAGTGCAGAGAGATTTCGCACTGAGCTCCTTAGACGCGGTGTTCTGTTAGTTCCTGTAATCTGGGGAGAAGGTAGGGAAGCAAAAATTGAGAAGAAAGGTTTTGGTCTTGCAGCAAAGGCTCCATCATCTCTTCCATCCATCGGGGAGGATTTTGATGAGCGAACACAATCCGTAGTTGCAAAATCGAAGTTGAAAGCTGAAATTAGGTTCAGGGCCGAGGTTATATCGCCAGCAGAATGGGAAAGGTGGATAAGGGATCAGCAGAAAGCTGAAGGAGTTACTCCTGGTCAAGATGTCTACATTATACTGCGGTTGGATGGTCGTGTTCGAAGATCAGGGAAAGGTATGCCTGACTGGCAGCAAATTTTGAATGAGCTACCCCCAATGGAAGCAATACTAAGCAAGCTAGAAAGATGA 1326 0.4487 MAVVAGALHHHLLYSSKWKIITSTSLHRPVLLSSRKKAQSFFISCSSSSSSTSQTPEANTETPEYCVNLGLELFSKGRVKDALVQFETALSLNPNPMEAQAALYNKACCHAYRGEGKKAADCLRTALKEYNLKFGTILNDPDLASLRALPEFKQLQEEARLGGEDIGYSFRRDLKVISEVQAPFRGIRRFFYIAFTAAAGISTFFTAPRLFRAIKGGDDAPDLWETAGNAAINIGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTSRIVELVQLRDTVRPVILAGKKESVSLALQSAERFRTELLRRGVLLVPVIWGEGREAKIEKKGFGLAAKAPSSLPSIGEDFDERTQSVVAKSKLKAEIRFRAEVISPAEWERWIRDQQKAEGVTPGQDVYIILRLDGRVRRSGKGMPDWQQILNELPPMEAILSKLER 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0230 441 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 50 156 - -
Lele08g0230 441 Pfam Low psii accumulation1 / Rep27 172 248 IPR021883 -
Lele08g0230 441 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Lele08g0230 441 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 45 439 - -
Lele08g0230 441 SMART tpr_5 63 96 IPR019734 GO:0005515
Lele08g0230 441 SMART tpr_5 100 133 IPR019734 GO:0005515
Lele08g0230 441 Gene3D Tetratricopeptide repeat domain 49 155 IPR011990 GO:0005515
Lele08g0230 441 SUPERFAMILY TPR-like 57 129 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0230 Lele-ChrLele08 1392665 1396030 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0230 08 1392665 1396030 Lele08g0230 08 1392665 1396030 ECH
Lele05g0410 05 2330034 2333392 Lele08g0230 08 1392665 1396030 hybridization
Lele06g0225 06 1370853 1374177 Lele08g0230 08 1392665 1396030 hybridization