Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0225 ATGGCTGTGGTTGCAGGTGCTCTGCACCACCACTTGCTCTATTCGTCGAAATGGAAGATCATCACTTCAACCTCCCTGCAAAGACCCGTTCTTTTAAGTTCAAGAAAGAAGGCTCAATCGTTTTTCATTTCCTGCTCTTCTTCCTCGTCTTCTACTTCACAGACTCCAGAAGCAAACACTGAAACCCCGGAATATTGCGTCAATCTCGGACTCGAACTCTTCTCCAAAGGACGGGTTAAGGATGCTTTGGTCCAGTTTGAAACTGCTCTATCTTTGGAGCCCAATTCTATGGAAGCCCAAGCTGCGCTTTATAATAAAGCTTGCTGCCATGCATACAGAGGGGAAGGAAAGAAAGCAGCTGATTGTCTGCGCACAGTTCTGAAGGAATACAACCTAAAATTTGGTACCATTCTCAATGATCCGGACTTGGCCTCTTTCAGAGCTTTGCCAGAATTCAAACAACTACAGGAAGAGGCCAGGCTAGGCGGTGAAGATATTGGCTACAGTTTTCGGAGAGACTTAAAACTTATTAGTGAAGTTCAAGCACCATTCCGTGGAATTAGGAGATTCTTCTATATAGCATTTACTGCAGCTGCAGGAATTTCTACATTCTTTACTGCGCCCAGGCTATTTCGTGCTATTAAAGGGGGGGATGATGCTCCTGATCTTTGGGAAACTGCTGGGAATGCCGCCATCAACATTGGAGGTATCATTGTTCTTGTGGCATTATTCTTATGGGATAATAAAAAAGAAGAGGAGCAACTTGCTCAGATATCACGAAATGAGACCCTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGCATAGTAGAACTCGTGCAGCTTCGGGATACAGTTAGACCGGTTATATTAGCAGGGAAAAAAGAAACGGTATATCTGGCTTTGCAAAGAGCGGAGAGATTTCGCACTGAGCTCCTTAGACGAGGTGTTCTGTTGGTTCCTGTAATCTGGGGAGAAGGTAGGGAAGCAAAAATTGAGAAGAAAGGTTTTGGTCTTGCAGCAAGAGCTCCCGCATCTCTTCCATCCGTCGGGGAAGATTTTGATGAGCGAACACAATCCATAGTTGCAAAATCGAAGTTGAAAGCTGAAATTAGGTTCAGGGCCGAGGTTATATCGCCAGCAGAATGGGAAAGGTGGATAAGGGATCAGCAGAAGGCTGAAGGAGTTACTCCTGGTGAAGATGTCTACATTATACTGCGGTTGGATGGTCGTGTTCGAAGATCAGGCAAAGGTATGCCTGACTGGCAGCAAATTGTTAATGAGCTACCCCCAATGGAAGCAATACTAAGCAAGCTAGAAAGATGA 1326 0.451 MAVVAGALHHHLLYSSKWKIITSTSLQRPVLLSSRKKAQSFFISCSSSSSSTSQTPEANTETPEYCVNLGLELFSKGRVKDALVQFETALSLEPNSMEAQAALYNKACCHAYRGEGKKAADCLRTVLKEYNLKFGTILNDPDLASFRALPEFKQLQEEARLGGEDIGYSFRRDLKLISEVQAPFRGIRRFFYIAFTAAAGISTFFTAPRLFRAIKGGDDAPDLWETAGNAAINIGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVYLALQRAERFRTELLRRGVLLVPVIWGEGREAKIEKKGFGLAARAPASLPSVGEDFDERTQSIVAKSKLKAEIRFRAEVISPAEWERWIRDQQKAEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVNELPPMEAILSKLER 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0225 441 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Lele06g0225 441 SUPERFAMILY TPR-like 57 129 IPR011990 GO:0005515
Lele06g0225 441 Pfam Low psii accumulation1 / Rep27 171 248 IPR021883 -
Lele06g0225 441 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 45 439 - -
Lele06g0225 441 SMART tpr_5 63 96 IPR019734 GO:0005515
Lele06g0225 441 SMART tpr_5 100 133 IPR019734 GO:0005515
Lele06g0225 441 Gene3D Tetratricopeptide repeat domain 49 154 IPR011990 GO:0005515
Lele06g0225 441 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 50 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0225 Lele-ChrLele06 1370853 1374177 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0225 06 1370853 1374177 Lele06g0225 06 1370853 1374177 ECH
Lele06g0225 06 1370853 1374177 Lele07g0427 07 2406824 2415854 hybridization
Lele06g0225 06 1370853 1374177 Lele08g0230 08 1392665 1396030 hybridization