Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0410 ATGGCTGCGGTTGCAGTTGCTCTGCACCACCACTTGCTCTACTTCTCGAGATGGAAGACCATCACTTCAACCTCACTGCACAGGCCCGTTCTTTTAAGTTCAAGAAAGAAGGCTTGTTCTTTTCTCATTTCCTGCTCTTCTTCGTCTTCTACTTCTCAGACTCCAGAAGCTAACACTGAAACACCGGAATATTGCGTCAATCTCGGACTCGAACTCTTCTCCAAAGGACGGGTTAAGGATGCTTTGGTCCAGTTTGAAACTGCTCTTTCTTTGGACCCCAATCCTATGGAAGCCCAAGCTGCGCTTTATAATAAAGCTTGCTGCCATGCATACAGAGGGGAAGGAAAGAAAGCAGCTGATTGTCTGCGCACAGCTCTCAAGAAATACAGCCTAAAATTTGGTACCATTCTCAATGATCCGGATTTGGCCTCTTTCAGAGCTTTGCCTGAATTCAAACAACTACAGGAAGAGGCCAGGCTAGGCGGTGAAGATATTGGCTACAGTTTTCGGAGAGACTTAAAACTTATTAGTGAAGTTCAAGCACCATTCCGTGGAATTAGGAGATTCTTCTATATAGCATTTACTGCAGCGGCAGGGATTTCTACGCTCTTTACTGTGCCCAGGCTGTTTCGTGCTATTAATGTGGGGGATGATGCTCCTGATCTTTGGGAAACTGCTGGGAATGCCGCCATCAACATTGGAGGTATCATTGTTCTTGTGGCGTTATTCTTATGGGATAATAAAAAAGAAGAGGAACAACTTGCACAGATATCACGCAATGAGACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGCATAGTAGAACTCGTGCAGCTACGGGACACAGTTAGACCAGTTATATTAGCAGGGAAAAAAGAAACAGTATCTCTGGCTTTGCAAAGAGCCGAGAGATTTCGCACTGAGCTCCTTAAACGCGGTGTTCTGTTGGTTCCTATAATCTGGGGAGAAGGTAGGGAAGCAAAAATTGAGAAGAAAGGTTTTGGTCTTGCAGCAAAGGCTTACTCATCTCTTCCATCCATTGGGGAAGATTTTGATGAGCGAACACAATCCATAGTTGCAAAATCGAAGTTGAAAGCTGAAATTAGGTTCAAGGCTGAGGTTATATCGCCAGCAGAATGGGAAAGGTGGATAAGGGATCAGCAGAAGGCTGAAGGAGTTACTCCTGGTGAAGATGTCTACATTATACTGCGGTTGGATGGTCGTGTTCGAAGATCAGGGAAAGGTATGCCTGACTGGCAGCAAATTGTGAATGAGCTACCACCAATGGAAGCAATACTAAGCAAGCTAGAAAGATGA 1323 0.449 MAAVAVALHHHLLYFSRWKTITSTSLHRPVLLSSRKKACSFLISCSSSSSTSQTPEANTETPEYCVNLGLELFSKGRVKDALVQFETALSLDPNPMEAQAALYNKACCHAYRGEGKKAADCLRTALKKYSLKFGTILNDPDLASFRALPEFKQLQEEARLGGEDIGYSFRRDLKLISEVQAPFRGIRRFFYIAFTAAAGISTLFTVPRLFRAINVGDDAPDLWETAGNAAINIGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSLALQRAERFRTELLKRGVLLVPIIWGEGREAKIEKKGFGLAAKAYSSLPSIGEDFDERTQSIVAKSKLKAEIRFKAEVISPAEWERWIRDQQKAEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVNELPPMEAILSKLER 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0410 440 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 49 155 - -
Lele05g0410 440 Gene3D Tetratricopeptide repeat domain 49 153 IPR011990 GO:0005515
Lele05g0410 440 ProSiteProfiles TPR repeat profile. 62 95 IPR019734 GO:0005515
Lele05g0410 440 SMART tpr_5 62 95 IPR019734 GO:0005515
Lele05g0410 440 SMART tpr_5 99 132 IPR019734 GO:0005515
Lele05g0410 440 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 46 438 - -
Lele05g0410 440 SUPERFAMILY TPR-like 56 129 IPR011990 GO:0005515
Lele05g0410 440 Pfam Low psii accumulation1 / Rep27 170 247 IPR021883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0410 Lele-ChrLele05 2330034 2333392 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0410 05 2330034 2333392 Lele05g0410 05 2330034 2333392 ECH
Lele05g0410 05 2330034 2333392 Lele07g0427 07 2406824 2415854 hybridization
Lele05g0410 05 2330034 2333392 Lele08g0230 08 1392665 1396030 hybridization