Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0220 ATGGCCTCCGAACTGATTTTCAGAGGCCACGAGTCCCAACCCGTCCACGATTCCTACTCCCCCAAGCCCCTCAAGCCTTGGCTCTCCGTCACTCGCCCTATTCGCTACCTCCTCCGCGAGCAGCGCCTCCTCTTCATCCTCCTCGGCATTGCCATCGCCTCCCTGTTCTTCACCTTCGTCCCTACCTCTCGCTCCCCTCCCCGCTCTGACTCTCTCTCTGTTCCTTACTTCGAGCACGATTCTCTCTCTGCTCCTCTGTTCCATGAGCCCAGGATCGACCGCTCTCTCCCCCATAAGATGCCTGTTCATTCATTCGGCAAGGTCCCCTTGGGGATTAAGAGAAAGGGACTCCGTATCGTGGTTACGGGCGGGGCGGGTTTCGTCGGGTCTCACCTCGTGGATCGTCTGATTGCTAGAGGCGACAGCGTCATCGTCGTTGATAATTTCTTCACCGGCAGGAAGGAGAACGTGATGCACCACTTCGGGAACCCCAGATTTGAGCTCATCCGACACGACGTCGTCGAGCCGCTCTTGCTGGAGGTGGATCAGATCTATCATCTTGCATGCCCTGCATCTCCCGTTCATTACAAGTTCAATCCCGTCAAGACTATCATATCCTTTTTATTTGACCCGGTCCAATTGTTCAATTTCTTGACCAATGTGGTGGGAACCTTGAACATGCTGGGGCTGGCCAAAAGAGTTGGCGCAAGATTTCTGCTAACCAGTACAAGTGAGGTTTACGGTGATCCTCTTCAACACCCTCAGAAGGAGACTTACTGGGGCAATGTCAATCCTATTGGTGTCCGAAGTTGTTACGACGAGGGAAAGCGTACGGCCGAGACGTTGGCAATGGATTACCACAGAGGAGCAGGCGTAGAGGTTAGAATTGCTAGAATATTTAACACCTATGGTCCCCGAATGTGCCTAGACGATGGTCGCGTTGTCAGTAACTTCGTTGCTCAGGCAGGCATTAAGAAAGGAGCCTTTGACTGTTTATGGGGATGGGAAGCAGACAAGGAGTTTTCAGTTGAGGGTCTGATGCGCCTTATGGAGGGAGAGCACGTGGGTCCTTTCAACCTCGGAAATCCTGGTGAATTCACCATGCTCGAACTTGCCAAGGTGGTGCAAGAAACAATAGATCCAGATGCGAAAATAGAGTACAGGTCCAACACAGAGGATGACCCACACAAGAGGAAGCCTGATATTTCAAGGGCCAAGGAGCTATTGGGGTGGGAGCCAAAGGTGAACCTGCGCAAGGGACTGCCTTTAATGGTTTCTGACTTCCGACAACGCATTTTTGGTGACCACAAGGAAGGTGCAACCTCCACCTAA 1332 0.5248 MASELIFRGHESQPVHDSYSPKPLKPWLSVTRPIRYLLREQRLLFILLGIAIASLFFTFVPTSRSPPRSDSLSVPYFEHDSLSAPLFHEPRIDRSLPHKMPVHSFGKVPLGIKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIISFLFDPVQLFNFLTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQAGIKKGAFDCLWGWEADKEFSVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPDAKIEYRSNTEDDPHKRKPDISRAKELLGWEPKVNLRKGLPLMVSDFRQRIFGDHKEGATST 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0220 443 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 25 436 IPR044516 GO:0042732|GO:0048040|GO:0070403
Lele08g0220 443 CDD UGD_SDR_e 118 429 - -
Lele08g0220 443 Pfam GDP-mannose 4,6 dehydratase 121 422 IPR016040 -
Lele08g0220 443 Gene3D - 117 434 - -
Lele08g0220 443 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 115 433 IPR036291 -
Lele08g0220 443 FunFam UDP-glucuronic acid decarboxylase 2 113 251 - -
Lele08g0220 443 MobiDBLite consensus disorder prediction 1 20 - -
Lele08g0220 443 FunFam UDP-glucuronic acid decarboxylase 1 252 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0220 Lele-ChrLele08 1317887 1320977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0220 20 421 Miscellaneous Gene Families AT4G00110 23.529 6.37e-13 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0220 08 1317887 1320977 Lele08g0220 08 1317887 1320977 ECH
Lele05g0395 05 2243834 2246212 Lele08g0220 08 1317887 1320977 hybridization
Lele06g0212 06 1290881 1294127 Lele08g0220 08 1317887 1320977 hybridization