Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0117 ATGGTGGCCGACGCGTTGATTCTCAATCCAGCCGCCGAATTCGGGAAGCGAATAAGTGCGTTCTTGGCACTGACAAGTGACTCCACAATTGCGGTCGTGTTCGCTCGTTTCCTTGGCTGCCATTTGCTTCCCCTCCGGCATATTTACAACAGGTGGAGCATCAGGATGGCCGGGGCTGGAGCTAACAAGCCCACTGCAAAACAATCTGCTGGTGGGAAGAAGAAAGAGGTGAAGAAAGAGACAGGTTTAGGGCTTTCAAATCGAAAGGCAGACAATTTTGGGGAGTGGTATTCTGAGGTAGTTGTCAATGGGGAAATGATTGAGTACTATGACATTTCCGGATGTTACATTCTTAGGCCATGGGCAATGTCAATCTGGGAGGAGATGCAAGCCTTCTTTGATGCAGAGTTAAAGAAAATGAAAGTGAAGAACTGCTACTTCCCTTTATTTGTGTCTCCTAGTGTTTTGCAAAAGGAGAAGGATCATGTTGAGGGCTTTGCACCAGAGGTTGCTTGGGTGACAAAATCTGGGGAAACTGATCTAGAGATTCCTATTGCTATCCGTCCGACTAGTGAAACTGTCATGTATCCATACTACTCTAAGTGGATAAGGGGACATCGTGATTTGCCTTTGAGACTTAATCAATGGTGCAATGTGGTTAGATGGGAGTTCAGTAATCCCACACCATTCATCAGGAGCCGTGAGTTTCTTTGGCAGGAAGGGCATACTGCTTTTGCGACAAAGGAGGAGGCAGATGAAGAGGTCCTCGAGGTATTGGAATTGTATAGGCGTATATATGAAGAATATCTTGCAATTCCTGTCATAAAGGGTAAGAAAAGTGAGCTGGAGAAGTTTGCCGGTGGACTTTACACCACTAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGCATACAAGGTGCAACTTCTCATTGTCTTGGCCAAAATTTTGCTAAAATGTTTGAGATAAATTTTGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCAGAACTCATGGGCCTATAGCACTCGAACTATTGGGGTCATGGTGATGGTTCATGGGGATGACAAAGGGCTTGTACTGCCACCTAAAGTAGCATCAGTGCAAGTTATTGTGATTCCAGTGCCTTATAAAGATGCTGATACTCAAGGTATTTTTGACGCCTGCTCTGCCACTGTGAATAATTTATGTGAAGCAGGTATTCGTGCTGAGTCAGACTTTAGAGATAACTATTCTCCTGGTTGGAAGTATTCACACTGGGAAATGAAAGGTGTTCCCCTCAGGATTGAAATCGGGCCAAAGGATTTGGCAAATAAGCAGGTGCGTGCTGTTCGACGTGATAATATGGGAAAAATAGACGTACCCATGGAAGATTTGGTCAAGCAAGTCAAAGACTTGCTGCATAATATTCAACAAAACCTATTTGATGTGGCCGAACAAAAACGAGATGCATGCATTCAGGTTGTACATACTTGGGATGAATTTGTGGAAGCATTGAGCCAACGCAAAATGATCTTGGCTCCTTGGTGTGATGAGGAGCCCGTTGAAGTAGATGTGAAAGCAAGGACAAAGGGTGAGATGGGAGCAGCTAAGACGCTTTGTAGCCCCTTTGATCAACCAGAACTCCCTGAAGGCACCAAGTGCTTTGCATCAGGAAAGCCGGCTAAGAAGTGGACATACTGGGGCAGAAGTTACTAG 1701 0.4509 MVADALILNPAAEFGKRISAFLALTSDSTIAVVFARFLGCHLLPLRHIYNRWSIRMAGAGANKPTAKQSAGGKKKEVKKETGLGLSNRKADNFGEWYSEVVVNGEMIEYYDISGCYILRPWAMSIWEEMQAFFDAELKKMKVKNCYFPLFVSPSVLQKEKDHVEGFAPEVAWVTKSGETDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLRLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADEEVLEVLELYRRIYEEYLAIPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACSATVNNLCEAGIRAESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNMGKIDVPMEDLVKQVKDLLHNIQQNLFDVAEQKRDACIQVVHTWDEFVEALSQRKMILAPWCDEEPVEVDVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKPAKKWTYWGRSY 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0117 566 FunFam bifunctional glutamate/proline--tRNA ligase 364 484 - -
Lele08g0117 566 SUPERFAMILY C-terminal domain of ProRS 488 566 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 SUPERFAMILY Class II aaRS and biotin synthetases 91 357 IPR045864 -
Lele08g0117 566 PANTHER PROLYL-TRNA SYNTHETASE 61 566 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 TIGRFAM proS_fam_I: proline--tRNA ligase 88 566 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 Gene3D - 487 566 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 CDD ProRS_anticodon_zinc 359 566 - -
Lele08g0117 566 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 186 351 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lele08g0117 566 Hamap Proline--tRNA ligase [proS]. 86 566 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 Pfam Prolyl-tRNA synthetase, C-terminal 493 566 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 Gene3D - 364 484 IPR036621 -
Lele08g0117 566 SMART ProRS_C_1_2 493 566 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 SUPERFAMILY Class II aaRS ABD-related 358 483 - -
Lele08g0117 566 FunFam Bifunctional glutamate/proline--tRNA ligase 85 363 - -
Lele08g0117 566 Pfam Anticodon binding domain 370 466 IPR004154 -
Lele08g0117 566 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 125 363 IPR006195 -
Lele08g0117 566 CDD ProRS_core_arch_euk 92 353 IPR033721 -
Lele08g0117 566 FunFam Proline--tRNA ligase, cytoplasmic 487 566 - -
Lele08g0117 566 Gene3D Bira Bifunctional Protein; Domain 2 86 363 IPR045864 -
Lele08g0117 566 PRINTS Prolyl-tRNA synthetase signature 215 223 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 PRINTS Prolyl-tRNA synthetase signature 144 162 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 PRINTS Prolyl-tRNA synthetase signature 225 236 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lele08g0117 566 PRINTS Prolyl-tRNA synthetase signature 185 196 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0117 Lele-ChrLele08 706029 716274 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0299 05 1682518 1687397 Lele08g0117 08 706029 716274 hybridization
Lele06g0114 06 709539 715253 Lele08g0117 08 706029 716274 hybridization