Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele05g0299 | ATGAGCTGGCACCTAATAATCCTTCTAATCTCTATTACTAAGCTAGTAAAAACCGGGTGTCACTCCTTTAAAAAACATAAAGTAGAGCCCGTTGATTCTCAATCCAGCCGCCGAATTCGGGAAGCGAATAAGTTAGCGTTCTTGGCACTAACGAGTGACTACCACCATTTGCTTCCCCTCCGGCATATTTGCAACAGGTGGAGCATCAGGATGGCCGGAGCTGGAGCTAACAAGCCCACTGCAAAACAATCTGGTGGGAAGAAGAAAGAGGTGAAGAAAGAGACAGGTTTAGGGCTTTCAAATCGAAAGGCAGACAACTTTGGGGAGTGGTACTCTGAGGTAGTTGTCAATGGGGAAATGATTGAGTACTATGACATTTCCGGATGTTACATTCTTAGGCCATGGGCAATGTCAATCTGGGAGGAGATGCAAGCCTTCTTTGATGCAGAGTTAAAGAAAATGAAAGTCAAGAACTGCTACTTCCCTTTATTTGTGTCTCCTGGCGTTTTACAAAAGGAGAAGGATCATGTTGAGGGCTTTGCGCCAGAGGTTGCTTGGGTGACAAAGTCTGGGGAAACTGATCTAGAGATTCCTATTGCTATCCGTCCCACTAGTGAAACTGTAATGTATCCATACTACTCTAAGTGGATAAGGGGACATCGTGATTTGCCTTTGAGACTTAATCAATGGTGCAATGTTGTTAGATGGGAGTTCAGTAATCCCACACCATTCATCAGGAGCCGTGAGTTTCTTTGGCAGGAAGGGCATACTGCTTTTGCGACAAAGGAGGAGGCAGATGCAGAGGTCCTCGAGGTATTGGAATTGTATAGGCGTATATATGAAGAATATCTTGCAATTCCCGTCATAAAGGGTAAGAAAAGTGAGCTGGAGAAGTTTGCTGGTGGACTTTACACCACTAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGCATACAAGGTGCAACTTCTCATTGTCTTGGCCAAAATTTTGCTAAAATGTTTGAGATAAATTTTGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCAGAACTCATGGGCCTATAGCACTCGAACTATTGGGGTCATGGTGATGGTTCATGGGGATGACAAAGGGCTTGTGCTGCCACCTAAAGTAGCATCAGTGCAAGTCATTGTGATTCCAGTGCCTTATAAAGATGCTGATACTCAAGGTATTCTTGATGCCTGCTTTGCCACTGTGAATACCTTATGTGAAGCAGGTATTCGTGTTGAGTCAGACTTTAGAGATAACTATTCTCCTGGTTGGAAGTATTCGCACTGGGAAATGAAAGGTGTTCCCCTAAGGATTGAAATTGGGCCAAAGGATTTGGCAAATAAGCAGGTGCGTGCTGTTCGACGTGATAATATGGGAAAAATAGACATACCCATGGAAGATTTGGTCAAGCAAGTCCAAGACCTGCTGCATAATATTCAACAAAACCTATTTGATGTGGCCAAACAAAGACGAGATGCATGCATTCAGGTTGTACATACTTGGGATGAATTTGTGGAAGCATTGAGCCAACGGAAAATGATCTTGGCTCCTTGGTGCGATGAGGAGTCCGTTGAAGTAGATGTGAAAGCAAGGACAAAGGGTGAGATGGGAGCAGCTAAGACGCTCTGTAGCCCCTTTGATCAACCAGAACTCCCTGAAGGCACCAAGTGCTTTGCATCAGGAAAGCCGGCTAAGAAGTGGACATACTGGGGCAGAAGTTACTAG | 1743 | 0.4458 | MSWHLIILLISITKLVKTGCHSFKKHKVEPVDSQSSRRIREANKLAFLALTSDYHHLLPLRHICNRWSIRMAGAGANKPTAKQSGGKKKEVKKETGLGLSNRKADNFGEWYSEVVVNGEMIEYYDISGCYILRPWAMSIWEEMQAFFDAELKKMKVKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGETDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLRLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLEVLELYRRIYEEYLAIPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGILDACFATVNTLCEAGIRVESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNMGKIDIPMEDLVKQVQDLLHNIQQNLFDVAKQRRDACIQVVHTWDEFVEALSQRKMILAPWCDEESVEVDVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKPAKKWTYWGRSY | 580 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele05g0299 | 580 | PRINTS | Prolyl-tRNA synthetase signature | 199 | 210 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | PRINTS | Prolyl-tRNA synthetase signature | 158 | 176 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | PRINTS | Prolyl-tRNA synthetase signature | 239 | 250 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | PRINTS | Prolyl-tRNA synthetase signature | 229 | 237 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | Pfam | Anticodon binding domain | 384 | 480 | IPR004154 | - | |
| Lele05g0299 | 580 | FunFam | Proline--tRNA ligase, cytoplasmic | 501 | 580 | - | - | |
| Lele05g0299 | 580 | MobiDBLite | consensus disorder prediction | 76 | 95 | - | - | |
| Lele05g0299 | 580 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 139 | 377 | IPR006195 | - | |
| Lele05g0299 | 580 | CDD | ProRS_core_arch_euk | 106 | 367 | IPR033721 | - | |
| Lele05g0299 | 580 | FunFam | bifunctional glutamate/proline--tRNA ligase | 378 | 498 | - | - | |
| Lele05g0299 | 580 | TIGRFAM | proS_fam_I: proline--tRNA ligase | 102 | 580 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | Gene3D | - | 378 | 498 | IPR036621 | - | |
| Lele05g0299 | 580 | Gene3D | - | 501 | 580 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | FunFam | Bifunctional glutamate/proline--tRNA ligase | 99 | 377 | - | - | |
| Lele05g0299 | 580 | SUPERFAMILY | C-terminal domain of ProRS | 502 | 580 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 200 | 365 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Lele05g0299 | 580 | Gene3D | Bira Bifunctional Protein; Domain 2 | 100 | 377 | IPR045864 | - | |
| Lele05g0299 | 580 | SUPERFAMILY | Class II aaRS ABD-related | 372 | 498 | - | - | |
| Lele05g0299 | 580 | SMART | ProRS_C_1_2 | 507 | 580 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | SUPERFAMILY | Class II aaRS and biotin synthetases | 105 | 371 | IPR045864 | - | |
| Lele05g0299 | 580 | Pfam | Prolyl-tRNA synthetase, C-terminal | 507 | 580 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | CDD | ProRS_anticodon_zinc | 373 | 580 | - | - | |
| Lele05g0299 | 580 | Hamap | Proline--tRNA ligase [proS]. | 100 | 580 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele05g0299 | 580 | PANTHER | PROLYL-TRNA SYNTHETASE | 77 | 580 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele05g0299 | Lele-ChrLele05 | 1682518 | 1687397 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele05g0299 | 05 | 1682518 | 1687397 | Lele07g0317 | 07 | 1751753 | 1757813 | hybridization | |
| Lele05g0299 | 05 | 1682518 | 1687397 | Lele08g0117 | 08 | 706029 | 716274 | hybridization |