Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele06g0114 | ATGTTGACGGAGGAGCCGAGGGAAACAGCTCCGCCCGCTGTCGCAGGTCACTCCGGCACAAGCTCCAACATGCTGAAAGAAAACATAAAGTGGAGCGCGTTGATTCTCAATCCAGCCGCCGAATTCGGGAAGCGAATAAGGGCGTTCTTGGCACTGACAAGTGACTCCACAATTGCGGTCGTGTTCGCTCGTTTCCTTGATCGCCATTTGCTTCCCCTCCGGAATATTTGCAACAGGTGGAGCATCAGGATGGCCGGAGCTGGAGCTAACAAGCCCACTGCAAAACAATCTGCTGGTGGGAAGAAGAAAGAGGTGAAGAAAGAGACAGGTTTAGGGCTTTCAAATCGAAAGGCAGACAACTTTGGGGAGTGGTACTCTGAGGTAGTTGTCAATGGGGAAATGATTGAGTACTATGACATTTCCGGATGTTACATTCTTAGGCCATGGGCAATGTCAATCTGGGAGGAGATGCAAGCCTTCTTTGATTCAGAGTTAAAGAAAATGAAAGTCAAGAACTGCTACTTCCCTTTATTTGTGTCCCCTGGTGTTTTGCAAAAGGAGAAGGATCATGTTGAGGGCTTTGCACCAGAGGTTGCTTGGGTGACGAAGTCTGGGGAAACTGATCTAGAGATTCCTATTGCTATCCGTCCGACTAGTGAAACTGTCATGTATCCATACTACTCTAAGTGGATAAGGGGACATCGTGATTTGCCTTTGAGACTAAATCAATGGTGCAATGTGGTTAGATGGGAGTTCAGTAATCCCACACCATTCATCAGGAGCCGTGAGTTTCTTTGGCAGGAAGGGCATACTGCTTTTGCGACAAGGGAGGAGGCAGATGCAGAGGTCCTCGAGGTATTGGAATTGTATAGGCGTATATATGAAGAATATCTTGCAATTCCTGTCATAAAGGGTAAGAAAAGTGAGCTGGAGAAGTTTGCCGGTGGACTTTACACCACTAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGCATACAAGGTGCAACTTCTCATTGTCTTGGCCAAAATTTTGCTAAAATGTTCGAGATAAATTTTGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCAGAACTCATGGGCCTATAGCACTCGAACTATTGGGGTCATGGTGATGGTTCATGGGGATGACAAAGGGCTTGTACTGCCACCTAAAGTAGCATCAGTGCAAGTCATTGTGATTCCAGTGCCTTATAAAGATGCTGATACTCAAGGTATTTTTGATGCCTGCTCTGCCACTGTGAATAATTTATGTGAAGCAGGTATTCGTGCTGAGTCAGACTTTAGAGATAACTATTCTCCTGGTTGGAAGTATTCACACTGGGAAATGAAAGGTGTTCCCCTCAGGATTGAAATCGGGCCAAAGGATTTGGCAAATAAGCAGGTGCGTGCTGTTCGACGTGATAATATTGGAAAAATAGACGTACCCATGGAAGATTTGGTCAAGCAAGTCAAAGACTTGCTGTATAATATTCAACAAAACCTATTTGACGTGGCCAAACAAAAGCGAGATGCATGCATTCAGGTTGTACATACTTGGGATGAATTTGTGGAAGCACTGAGCCAACGGAAAATGATCTTGGCTCCTTGGTGTGATGAGGAGCCCGTTGAAGTAGATGTGAAAGCAAGGACAAAGGGGGAGATGGGAGCAGCTAAGACGCTTTGTAGCCCCTTTGATCAACCAGAACTCCCTGAAGGCACCAAGTGCTTTGCATCAGGAAAGGCGGCTAAGAAGTGGACATACTGGGGCAGAAGTTACTAG | 1785 | 0.4599 | MLTEEPRETAPPAVAGHSGTSSNMLKENIKWSALILNPAAEFGKRIRAFLALTSDSTIAVVFARFLDRHLLPLRNICNRWSIRMAGAGANKPTAKQSAGGKKKEVKKETGLGLSNRKADNFGEWYSEVVVNGEMIEYYDISGCYILRPWAMSIWEEMQAFFDSELKKMKVKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGETDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLRLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATREEADAEVLEVLELYRRIYEEYLAIPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACSATVNNLCEAGIRAESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNIGKIDVPMEDLVKQVKDLLYNIQQNLFDVAKQKRDACIQVVHTWDEFVEALSQRKMILAPWCDEEPVEVDVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKAAKKWTYWGRSY | 594 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele06g0114 | 594 | FunFam | bifunctional glutamate/proline--tRNA ligase | 392 | 512 | - | - | |
| Lele06g0114 | 594 | CDD | ProRS_anticodon_zinc | 387 | 594 | - | - | |
| Lele06g0114 | 594 | SMART | ProRS_C_1_2 | 521 | 594 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 214 | 379 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Lele06g0114 | 594 | Gene3D | - | 515 | 594 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | SUPERFAMILY | Class II aaRS and biotin synthetases | 119 | 385 | IPR045864 | - | |
| Lele06g0114 | 594 | TIGRFAM | proS_fam_I: proline--tRNA ligase | 116 | 594 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | PRINTS | Prolyl-tRNA synthetase signature | 172 | 190 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | PRINTS | Prolyl-tRNA synthetase signature | 213 | 224 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | PRINTS | Prolyl-tRNA synthetase signature | 243 | 251 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | PRINTS | Prolyl-tRNA synthetase signature | 253 | 264 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 153 | 391 | IPR006195 | - | |
| Lele06g0114 | 594 | Pfam | Prolyl-tRNA synthetase, C-terminal | 521 | 594 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | FunFam | Bifunctional glutamate/proline--tRNA ligase | 113 | 391 | - | - | |
| Lele06g0114 | 594 | Pfam | Anticodon binding domain | 398 | 494 | IPR004154 | - | |
| Lele06g0114 | 594 | SUPERFAMILY | C-terminal domain of ProRS | 516 | 594 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | FunFam | Proline--tRNA ligase, cytoplasmic | 515 | 594 | - | - | |
| Lele06g0114 | 594 | Hamap | Proline--tRNA ligase [proS]. | 114 | 594 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Lele06g0114 | 594 | SUPERFAMILY | Class II aaRS ABD-related | 386 | 512 | - | - | |
| Lele06g0114 | 594 | PANTHER | PROLYL-TRNA SYNTHETASE | 89 | 594 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lele06g0114 | 594 | Gene3D | - | 392 | 512 | IPR036621 | - | |
| Lele06g0114 | 594 | Gene3D | Bira Bifunctional Protein; Domain 2 | 114 | 391 | IPR045864 | - | |
| Lele06g0114 | 594 | CDD | ProRS_core_arch_euk | 120 | 381 | IPR033721 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele06g0114 | Lele-ChrLele06 | 709539 | 715253 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele06g0114 | 06 | 709539 | 715253 | Lele07g0317 | 07 | 1751753 | 1757813 | hybridization | |
| Lele06g0114 | 06 | 709539 | 715253 | Lele08g0117 | 08 | 706029 | 716274 | hybridization |