Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0093 ATGGCTTCCTCTCTTTTCACTCTGATTACTTTGTTTCTAGCTTTCTCCGCCCTTTCTCTCCTGATCACTGAGGCGGAAGTAGAAAAACTTCCTAGTCTCAAGCTTAACTCTCATATCCTCCAGGAGTCTATTGTTGAACAGATTAATGGAAATCCAGAAGCAGGGTGGAAAGCTGCCATGAGTCCTCGTTTCTCTAATTATACAGTTGGACAATTTAAGCACCTTCTAGGGGTCAAGCAAACACCTAGACAGGTATTAAGAAGTACTCCTGTCAAAACTCATCCAAAAGCATTAAAATTGCCAAATGAGTTTGATGCGAGAACAGCTTGGAAGCAGTGTAGCACAATTGGAAGAATTCTAGGTTACCTACTTGCTTCTCCTTTGGGTCACTGTGGTTCTTGCTGGGCATTCGGCGCTGTTGAATCATTATCAGACCGTTTCTGCATCCATTTTGGCATGAATGTATCGCTCTCTGTTAATGACCTTCTCTCTTGCTGTGGATTTTTGTGTGGAGCTGGCTGTGATGGAGGTTACCCCCTCAACGCATGGCAATACCTTGTCCGCCAGGGTGTTGTTACTGAAGAGTGTGACCCATACTTTGATCAGATTGGTTGTTCTCACCCTGGTTGCGAGCCTGCATTTCCAACACCTATGTGTGAGAGAAAGTGCGTCAATGGTAACCAGCTTTGGAGCCGGTCAAAGCACTATAGTGATAATTCATATAGGGTCAACTCTGATCCCTATGATATCATGACAGAAGTTTATAAGAATGGGCCGGTTGAGGTTTCTTTCACAGTTTATGAGGATTTCGCTCACTACAAGTCAGGAGTATACAAACACGTCACAGGTTTTGTGATGGGAGGTCATGCTGTGAAGCTAATTGGGTGGGGAACCACTGATAATGGAGAGGACTATTGGCTTCTGGCAAATCAGTGGAATAGAAGTTGGGGTGATGATGGCTACTTCAAGATCAGAAGAGGCACAAACGAGTGTGGTATTGAAGAAGAAGTTGTCGCCGGTTTGCCTTCCACTAAAAATCTTGTGTTGGATGTGGCTGACGTGGACGACGATGCGGTTGCTTCATTCTGA 1089 0.4472 MASSLFTLITLFLAFSALSLLITEAEVEKLPSLKLNSHILQESIVEQINGNPEAGWKAAMSPRFSNYTVGQFKHLLGVKQTPRQVLRSTPVKTHPKALKLPNEFDARTAWKQCSTIGRILGYLLASPLGHCGSCWAFGAVESLSDRFCIHFGMNVSLSVNDLLSCCGFLCGAGCDGGYPLNAWQYLVRQGVVTEECDPYFDQIGCSHPGCEPAFPTPMCERKCVNGNQLWSRSKHYSDNSYRVNSDPYDIMTEVYKNGPVEVSFTVYEDFAHYKSGVYKHVTGFVMGGHAVKLIGWGTTDNGEDYWLLANQWNRSWGDDGYFKIRRGTNECGIEEEVVAGLPSTKNLVLDVADVDDDAVASF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0093 362 FunFam cathepsin B-like protease 2 33 347 - -
Lele08g0093 362 Pfam Peptidase family C1 propeptide 40 82 IPR012599 GO:0004197|GO:0050790
Lele08g0093 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 59 334 - -
Lele08g0093 362 CDD Peptidase_C1A_CathepsinB 101 340 - -
Lele08g0093 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 287 297 IPR025660 -
Lele08g0093 362 Gene3D Cysteine proteinases 32 348 - -
Lele08g0093 362 SMART pept_c1 100 341 IPR000668 GO:0006508|GO:0008234
Lele08g0093 362 PRINTS Papain cysteine protease (C1) family signature 305 311 IPR000668 GO:0006508|GO:0008234
Lele08g0093 362 PRINTS Papain cysteine protease (C1) family signature 289 299 IPR000668 GO:0006508|GO:0008234
Lele08g0093 362 PRINTS Papain cysteine protease (C1) family signature 128 143 IPR000668 GO:0006508|GO:0008234
Lele08g0093 362 SUPERFAMILY Cysteine proteinases 46 342 IPR038765 -
Lele08g0093 362 Pfam Papain family cysteine protease 101 340 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0093 Lele-ChrLele08 555652 559574 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0272 05 1543318 1546884 Lele08g0093 08 555652 559574 hybridization
Lele06g0092 06 570120 572454 Lele08g0093 08 555652 559574 hybridization