Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0272 ATGGCTTACTATCTTTTCACTCTGATTACTTTGTTTCTAGCTTTACCCGCCCTCTCTCTCCAGAGAGATGCTAGATTTGATGCGCTGGAAGTTTATCTTCATCTGCTTTCAAAGCAGTGGTTTATCACTGAGGCAGAAGTAGAAGAACTTCCCAGTCTCAAGCTTAGCTCTCATATCCTCCAGGAGTCTATTGTTGAACAGATTAATGGAAATCCAAAAGCAGGGTGGAAGGGTGTCTTGAGTCCCCGCTTCTCTAATTATACAGTTGGACAATTTAAGCACCTTCTAGGGGTCAAGCAAACACCTAGAAAGGAATTAAGAAGTGCTCCTGTCAAAACTCATCCAAAAGCATTAAAATTGCCAAATGAGTTTGATGCAAGAACAGCTTGGAAGCAGTGTAGCACAATTGGAAGAATCCTAGTTGCTGACTCTTCTTCTTTGATGAACACATGGGATGGTCACTGTGGTTCTTGCTGGGCATTCGGCGCAGTTGAATCATTGTCAGACCGTTTCTGCATCCATTTTGGCATGAATGTGTCGCTCTCTGTTAATGACCTTCTCTCTTGCTGTGGATTTTTGTGTGGAGCTGGCTGTGATGGAGGTGACCCCCTCAATGCATGGCAATACCTTGTCCGCCAGGGTGTTGTTACTGAAGAGTGTGACCCATACTTTGATCAGATTGGTTGTTCTCACCCTGGTTGCGAGCCTGCATTTCCAACACCTATGTGTGAGAGAAAGTGCGTCAACGGTAACCAGCTTTGGAGCCAATCAAAGCACTATAGTGATAATGCATATATGGTCAACTCTGATCCCTATGACATCATGACAGAAGTTTATAAGAATGGGCCGGTTGAGGTTGCTTTCACAGTTTATGAGGATTTCGCTCACTACAAATCAGGAGTATACAGACACGTCACAGGTTCCTTGATGGGAGGTCATGCTGTGAAGCTAATTGGGTGGGGAACCACTGATGATGGAGAGGACTATTGGCTTCTCGCAAATCAGTGGAATAGAAGTTGGGGTGATGATGGCTATTTCAAGATCAGAAGAGGCACAAACGAGTGTGGTATTGAAGACGGGGTTGTCGCCGGTTTGCCTTCCACAAAAAATCTGGTGTGGGAGGTAGCTGATGTGGACGACGACGCGGTTGTTTCATTCTGA 1161 0.4522 MAYYLFTLITLFLALPALSLQRDARFDALEVYLHLLSKQWFITEAEVEELPSLKLSSHILQESIVEQINGNPKAGWKGVLSPRFSNYTVGQFKHLLGVKQTPRKELRSAPVKTHPKALKLPNEFDARTAWKQCSTIGRILVADSSSLMNTWDGHCGSCWAFGAVESLSDRFCIHFGMNVSLSVNDLLSCCGFLCGAGCDGGDPLNAWQYLVRQGVVTEECDPYFDQIGCSHPGCEPAFPTPMCERKCVNGNQLWSQSKHYSDNAYMVNSDPYDIMTEVYKNGPVEVAFTVYEDFAHYKSGVYRHVTGSLMGGHAVKLIGWGTTDDGEDYWLLANQWNRSWGDDGYFKIRRGTNECGIEDGVVAGLPSTKNLVWEVADVDDDAVVSF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0272 386 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Lele05g0272 386 PRINTS Papain cysteine protease (C1) family signature 313 323 IPR000668 GO:0006508|GO:0008234
Lele05g0272 386 PRINTS Papain cysteine protease (C1) family signature 329 335 IPR000668 GO:0006508|GO:0008234
Lele05g0272 386 Gene3D Cysteine proteinases 53 372 - -
Lele05g0272 386 CDD Peptidase_C1A_CathepsinB 121 364 - -
Lele05g0272 386 Pfam Papain family cysteine protease 153 364 IPR000668 GO:0006508|GO:0008234
Lele05g0272 386 SMART pept_c1 120 365 IPR000668 GO:0006508|GO:0008234
Lele05g0272 386 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 69 358 - -
Lele05g0272 386 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 311 321 IPR025660 -
Lele05g0272 386 SUPERFAMILY Cysteine proteinases 82 366 IPR038765 -
Lele05g0272 386 FunFam cathepsin B-like protease 2 53 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0272 Lele-ChrLele05 1543318 1546884 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0272 05 1543318 1546884 Lele07g0290 07 1597594 1601165 hybridization
Lele05g0272 05 1543318 1546884 Lele08g0093 08 555652 559574 hybridization