Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0082 ATGGACGTACTAGCCAGCCAGGCACTCCCTGCCTCATCATCGGTTAAAGTAAACGGGTTCGTGTGCAAGGATGCTTCCAAGGTGTACGCCTCGGACTTCTTCTCCGACATACTGGCCAAACCAGGAGACACCAATAAGACCTCTGGCTTTCTGAGTACTGGAACCAACGTTCAGAAAATCCCCTGGCCTCAACACCCTCGGCGTGAACTTTACGTCGGCTTCATAACCACGTCCGATCGCCTCGCATCCAAGAACGTTCGGAAGGGTCAGACCTTTGTGCTTCCCAAAGGTGTGGTTCATTCCCTAAAGAACAATGAGCAGCAAGCTGCCTCTGTAATTGCGGCATTCGATAGTCAGTTCCCTGGTAAGCAGTACTTCCCCACCACGTTGTTCGCCGCCACGCCGCCGGTGCCGGATGACGTTTTGGCACAGGCGTTCCAGGTGGTGTGTGAAGATCATATATACCTAACTATGAAGTTCTTGCTTTCCCTGCTTCTCCTCCCTCTTGCTCTGCTTTTTGCTGCTGTTCTCGCATCTGATCCTGACGCTTTACAAGACATCTGTGTCGCCGATCTTACCTCCGCGGTTAAAGTAAACGGGTTCGTGTGCAAGGATGCTTCCAAGGTGAATGCCTCCGATTTCTTCTCCGACATACTGGCCAAACCAGGAGCCACCAATAACACCTTTGGCTCGTTGGTCACCGGAGCCAACGTTCAGAAAATCCCTGGCCTCAACACCCTCGGCGTCTCACTCTCACGCATTGACTACGCGCCCGGTGGCATCAACCCACCCCACACGCACCCCCGCGCCACCGAGATGATTTTTGTGCTCGAGGGTGAACTTCTTGTCGGCTTCATAACCACGTCCAATCAGCTCATATCCAGGAAGATTCAGAAGGGCGAGACCTTTGTGTTCCCGAAAGGTTTGGTCCATTTCCAAAAGAACGTTGGGTATCAAGCTGCCTCTGTGATTGCGGCATTCAATAGTCAGCTTCCTGGTACGCAGTCTATCGCCACCACCTTGTTCGCCTCCACGCCGCCGGTGCCGGACAATGTCTTGGCCCAGGCGTTCCAGGTGGGTACCAAAGAGGTTGAGAAAATAAAGTCTGGGCTGGCCCCCAAGAAGCAGTAG 1131 0.5349 MDVLASQALPASSSVKVNGFVCKDASKVYASDFFSDILAKPGDTNKTSGFLSTGTNVQKIPWPQHPRRELYVGFITTSDRLASKNVRKGQTFVLPKGVVHSLKNNEQQAASVIAAFDSQFPGKQYFPTTLFAATPPVPDDVLAQAFQVVCEDHIYLTMKFLLSLLLLPLALLFAAVLASDPDALQDICVADLTSAVKVNGFVCKDASKVNASDFFSDILAKPGATNNTFGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEMIFVLEGELLVGFITTSNQLISRKIQKGETFVFPKGLVHFQKNVGYQAASVIAAFNSQLPGTQSIATTLFASTPPVPDNVLAQAFQVGTKEVEKIKSGLAPKKQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0082 376 SUPERFAMILY RmlC-like cupins 13 148 IPR011051 -
Lele08g0082 376 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 69 148 - -
Lele08g0082 376 FunFam germin-like protein subfamily 2 member 1 179 373 - -
Lele08g0082 376 SMART Cupin_1_3 216 365 IPR006045 -
Lele08g0082 376 SMART Cupin_1_3 35 155 IPR006045 -
Lele08g0082 376 ProSitePatterns Germin family signature. 260 273 IPR019780 GO:0030145
Lele08g0082 376 Gene3D Jelly Rolls 3 65 IPR014710 -
Lele08g0082 376 Gene3D Jelly Rolls 67 161 IPR014710 -
Lele08g0082 376 Gene3D Jelly Rolls 179 373 IPR014710 -
Lele08g0082 376 PRINTS Germin signature 265 285 IPR001929 GO:0030145
Lele08g0082 376 PRINTS Germin signature 295 315 IPR001929 GO:0030145
Lele08g0082 376 PRINTS Germin signature 328 343 IPR001929 GO:0030145
Lele08g0082 376 CDD cupin_OxOx 180 371 - -
Lele08g0082 376 Pfam Cupin 69 148 IPR006045 -
Lele08g0082 376 Pfam Cupin 219 364 IPR006045 -
Lele08g0082 376 SUPERFAMILY RmlC-like cupins 180 370 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0082 Lele-ChrLele08 483387 486833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0082 171 375 Miscellaneous Gene Families AT3G05930 57.971 2.70e-82 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0261 05 1473281 1474141 Lele08g0082 08 483387 486833 hybridization
Lele06g0079 06 507956 512149 Lele08g0082 08 483387 486833 hybridization