Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0079 ATGAAGACAGGTGGAGAACCCAGTTCAATGCGTATGCTGGTTCCTTATCCACTTGTATATGAAAATGTCATTACCGTCTTAACAGGAGTCGTGACAATCTCCAACAAGATTAAGTCATAGCCAACGTTTAGAAAATCCCCTGGCCTCAACACTCTCGGAGTCTCACTCTCACGCATTGACTTCGCCCCTGGTGACTTCAACCCACCCCACACCCACCCACGCGACTCCGAGATGGTTTTTGTTCTTGAAGGTGAACTTTACGTCGGCTTCATAACCACGTCCAATCGCCTCATATCCAAGAACGTTCGGAAGGGTCAGACCTATGTGCTTCCCAAAGGTTTGGTTCATTCCCTAAAGAACAATGAGCAGCAAGGTGCCTCTGTCATTTCGGTATTCAATAGTCAGTTCCCTGGTAAGCAGTACTTCCCCACCACCTTGTTCGCTGCCACGCCGCCGGTGCCGGTTGACGTTTTGGCACAGGCGTTCCATGTGGTGTGTGAATATCATATATACCTAACTATGAAGTTCTCGCTCTCCCTGCTTCTCCTCCCTCTTGCTCTGCTTTTTGCTGCTGTTCTCGCATCTGATCCTGACGCTCTACAAGACATCTGTGTCGCCGATCTTACCTCCGCGGTTAAAGTAAACGGGTTCGTGTGCAAGGATGCTTCCAAGGTGAATGCCTCCGATTTCTTCTCCGACATACTGGCCAAACCAGGAGCCACCAATAACACCTTTGGCTCGTTGGTCACCGGAGCCAACGTTCAGAAAATCCCTGGCCTCAACACCTTCGGCGTCTCACTCTCACGCATTGACTACGCGCCCGGTGGCATCAACCCACCCCACACGCACCCACGCGCCACCGAGATGGTTTTTGTGCTCGAGGGTGAACTTCTCGTCGGCTTCATAACCACGTCCAATCAGCTCATATCCAAGAAGATTCAGAAGGGCGAGACCTTTGTGTTCCCGAAAGGTTTAGTTCATTTCCAAAAGAACGTTGGGTATCAAGCTGCCTCTGTGATTGCGGCATTCAATAGTCAGCTTCCTGGTACGCAGTCTATCGCCACCACCTTGTTCGCCTCCACGCCGCCGGTGCCGGACAATGTCTTGGCGCAGGCCTTCCAGGTGGGTACCAAGGAGGTTGAGAAAATCAAGTCTGGGCTGGCACCGAAGAAGCAGTAG 1179 0.5165 MKTGGEPSSMRMLVPYPLVYENVITVLTGVVTISNKIKSXPTFRKSPGLNTLGVSLSRIDFAPGDFNPPHTHPRDSEMVFVLEGELYVGFITTSNRLISKNVRKGQTYVLPKGLVHSLKNNEQQGASVISVFNSQFPGKQYFPTTLFAATPPVPVDVLAQAFHVVCEYHIYLTMKFSLSLLLLPLALLFAAVLASDPDALQDICVADLTSAVKVNGFVCKDASKVNASDFFSDILAKPGATNNTFGSLVTGANVQKIPGLNTFGVSLSRIDYAPGGINPPHTHPRATEMVFVLEGELLVGFITTSNQLISKKIQKGETFVFPKGLVHFQKNVGYQAASVIAAFNSQLPGTQSIATTLFASTPPVPDNVLAQAFQVGTKEVEKIKSGLAPKKQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0079 392 Gene3D Jelly Rolls 195 389 IPR014710 -
Lele06g0079 392 Gene3D Jelly Rolls 27 178 IPR014710 -
Lele06g0079 392 CDD cupin_OxOx 47 164 - -
Lele06g0079 392 Pfam Cupin 45 164 IPR006045 -
Lele06g0079 392 Pfam Cupin 235 380 IPR006045 -
Lele06g0079 392 SUPERFAMILY RmlC-like cupins 196 386 IPR011051 -
Lele06g0079 392 SUPERFAMILY RmlC-like cupins 43 164 IPR011051 -
Lele06g0079 392 PRINTS Germin signature 281 301 IPR001929 GO:0030145
Lele06g0079 392 PRINTS Germin signature 344 359 IPR001929 GO:0030145
Lele06g0079 392 PRINTS Germin signature 311 331 IPR001929 GO:0030145
Lele06g0079 392 FunFam germin-like protein subfamily 2 member 1 195 389 - -
Lele06g0079 392 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 189 385 - -
Lele06g0079 392 ProSitePatterns Germin family signature. 276 289 IPR019780 GO:0030145
Lele06g0079 392 CDD cupin_OxOx 196 387 - -
Lele06g0079 392 SMART Cupin_1_3 232 381 IPR006045 -
Lele06g0079 392 SMART Cupin_1_3 28 171 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0079 Lele-ChrLele06 507956 512149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0079 187 391 Miscellaneous Gene Families AT3G05930 57.488 3.29e-81 246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0079 06 507956 512149 Lele07g0278 07 1521869 1523798 hybridization
Lele06g0079 06 507956 512149 Lele08g0082 08 483387 486833 hybridization