Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0261 ATGAAGTTCTCGCTCTCGCTGCTTTTCCTCCCTCTTGCTGTGCTTTTTGCTGCTGTTACCGCAGCTGATCCCGACGCTCTCCAAGACCTCTGTGTCGCCGATCTTACCTCCGCGATTAAAGTAAACGGGTTCGTGTGTAAGGATGCTTCGAAGGTGAATGCCTCAGACTTCTTTTCCGACATACTGGCCAAACCAGGAGCCACCAATAACACCTTTGGCTCATTGGTCACCGGAGCCAACGTTCAGAAAATCCCCGGCCTCAACACCCTCGGCGTCTCACTCTCACGCATTGACTACGCGCCCGGTGGCATCAACCCACCCCACACCCACCCACGCGCCACCGAGATGGTTTTTGTGCTCAAAGGTGAACTTTTCGTCGGCTTCATAACCACGTCCAATCAGCTCGTATCTAAGAAGATTCAGAAGGGTGAGACCTTTGTGTTCCCGAAAGGTTTGGTTCATTTCCAAAAGAACATTGGACATCAAGCTGCCTCTGTAATTGCGGCATTCAATAGTCAGTTTCCTGGTACACAGTCTATCGCCACCACCTTGTTCGCCTCCACGCCGCCGGTGCCGGACAATGTTTTGGCACAAGCGTTCCAGGTGGGTACCAAGGAGGTTGAGAAAATCAAGTCTGGGCTTGCACCCAAGAAGTAG 657 0.5236 MKFSLSLLFLPLAVLFAAVTAADPDALQDLCVADLTSAIKVNGFVCKDASKVNASDFFSDILAKPGATNNTFGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEMVFVLKGELFVGFITTSNQLVSKKIQKGETFVFPKGLVHFQKNIGHQAASVIAAFNSQFPGTQSIATTLFASTPPVPDNVLAQAFQVGTKEVEKIKSGLAPKK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0261 218 Pfam Cupin 62 207 IPR006045 -
Lele05g0261 218 FunFam germin-like protein subfamily 2 member 1 22 216 - -
Lele05g0261 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 212 - -
Lele05g0261 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Lele05g0261 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Lele05g0261 218 CDD cupin_OxOx 23 214 - -
Lele05g0261 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Lele05g0261 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Lele05g0261 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Lele05g0261 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Lele05g0261 218 SMART Cupin_1_3 59 208 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0261 Lele-ChrLele05 1473281 1474141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0261 1 218 Miscellaneous Gene Families AT3G05930 54.338 3.64e-85 249
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0261 05 1473281 1474141 Lele07g0278 07 1521869 1523798 hybridization
Lele05g0261 05 1473281 1474141 Lele08g0082 08 483387 486833 hybridization