Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1474 ATGTCTGGGGAAGGCTTTGACGGACAGGATGCGGGCTATGTGCCCGAGAACCCCAATTTCCCACAAAATCATTCTGATGAGCATGATGCAGGAGTGATTGATAATACCGGATATCCTGAACAAGAGTCTGTAGAACATGATGCAGGCAATGCCGTTGAGGAATACAATCCTCCTGACAATCATTTGGATGGACTTGATGCTGGAGATATGCCCAAAAATTCTGAATCTCCGCAACAGCATATTGATGAACATCATGAGGTAGGAGATATAACTGGGAGTTTTGATTCTCAGAAGCAGGAACATGATTTAGATTCAAAAGGAACTGAAATAAAACGGTGGCCAGGGTGGCCTGGAGAGAATGTTTTCAGAATGTTGGTTCCTGTTCAGAAAGTTGGCAGTATCATTGGTCGCAAGGGGGAATTTATTAAGAAAATTACTGAAGAGACAAAAGCTCGTATTAAAATACTTGATGGTCCCCCTGGAACCTCAGAAAGAGCGGTAATGGTATCTGCAAAAGAAGAGCCAGATCGGACCACCCCACCTGCTGTGGATGGCTTGTTAAGGGTTCATAAACAAATTGTCAATGTTGACCGCGATCCTGCAGATAGCACATCTGTTGCTGGGCGCACAGTTGTTACAAGACTTCTTGTTGCCGATACTCAAGCAGGAAGCTTGATTGGGAAGCAAGGGTCTACTATAAAATCCATTCAAGATACATCTGGTTGTACCATACGAGTCCTTGGATCAGAGCACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGTGAATCTGCTGGAGTATACAAGGCAGTTGAACTTATTGCAACTCATCTGAGAAAGTTCTTGGTAGACCGAAGCATAGTTGGAGTATTTGAAACGCAGATGCAATCGCCAGATGTTCGAGCCAGCCAGACTATGCCACCACACCAGCCATGGGGTCCTCCACCTCAAGGATTTCCAGCTTCTGCAGCTGGTGGACCTCCATTTGCTCCTAACCCTCAATATATGCCACCTTCACATCACTACGATAACTATTACCCACCTGCTGATCTGCCTCCCATGGACAAGCACCTTCATCAGGGACCACCTGCTTATGGAAGGGATGCTTCTATGGTGTCCAGTGCGCAGCCACAACAATCTGTTGTGACTAAGGTTACACAGCATATGCAAATTCCTCTGTCCTATGCAGATGCAGTTATTGGAACATCAGGTGCAAACATCAGCTACATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAAGAGACAAGGGGTGTTCCAGGGGAGATGACTGTTGAAATAAGTGGGACTTCTTCACAAATACAGGCTGCTCAACAACTGGTGCAGAACTTCATGGCTGAAGCTGCAAGCACGGCACAGGATCAAATGGGGGGATCAGTTGCGCAAGGCTACAATTCGTATCCTGCAAATGCTCCTGTTTATGCATCTCCACCCTCAAGCGCTGGTGACCATACAGGGCACGCGCCTGCAGCTGATTATGGTCCTGTATACGGCACCAATTATGGCTATTGA 1548 0.4638 MSGEGFDGQDAGYVPENPNFPQNHSDEHDAGVIDNTGYPEQESVEHDAGNAVEEYNPPDNHLDGLDAGDMPKNSESPQQHIDEHHEVGDITGSFDSQKQEHDLDSKGTEIKRWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTSERAVMVSAKEEPDRTTPPAVDGLLRVHKQIVNVDRDPADSTSVAGRTVVTRLLVADTQAGSLIGKQGSTIKSIQDTSGCTIRVLGSEHLPVFALRDDSVVEIQGESAGVYKAVELIATHLRKFLVDRSIVGVFETQMQSPDVRASQTMPPHQPWGPPPQGFPASAAGGPPFAPNPQYMPPSHHYDNYYPPADLPPMDKHLHQGPPAYGRDASMVSSAQPQQSVVTKVTQHMQIPLSYADAVIGTSGANISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFMAEAASTAQDQMGGSVAQGYNSYPANAPVYASPPSSAGDHTGHAPAADYGPVYGTNYGY 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1474 515 MobiDBLite consensus disorder prediction 313 336 - -
Lele07g1474 515 CDD KH-I 391 454 - -
Lele07g1474 515 Pfam KH domain 391 454 IPR004088 GO:0003723
Lele07g1474 515 Pfam KH domain 122 174 IPR004088 GO:0003723
Lele07g1474 515 Pfam KH domain 213 280 IPR004088 GO:0003723
Lele07g1474 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 209 293 IPR036612 GO:0003723
Lele07g1474 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 114 173 IPR036612 GO:0003723
Lele07g1474 515 Gene3D K Homology domain, type 1 377 466 IPR036612 GO:0003723
Lele07g1474 515 MobiDBLite consensus disorder prediction 303 336 - -
Lele07g1474 515 CDD PCBP_like_KH 121 190 - -
Lele07g1474 515 MobiDBLite consensus disorder prediction 1 78 - -
Lele07g1474 515 Gene3D K Homology domain, type 1 121 190 IPR036612 GO:0003723
Lele07g1474 515 ProSiteProfiles Type-1 KH domain profile. 119 183 - -
Lele07g1474 515 CDD PCBP_like_KH 212 280 - -
Lele07g1474 515 ProSiteProfiles Type-1 KH domain profile. 389 453 - -
Lele07g1474 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 379 460 IPR036612 GO:0003723
Lele07g1474 515 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 109 478 - -
Lele07g1474 515 SMART kh_6 209 284 IPR004087 GO:0003676
Lele07g1474 515 SMART kh_6 118 198 IPR004087 GO:0003676
Lele07g1474 515 SMART kh_6 388 458 IPR004087 GO:0003676
Lele07g1474 515 Gene3D K Homology domain, type 1 207 285 IPR036612 GO:0003723
Lele07g1474 515 ProSiteProfiles Type-1 KH domain profile. 210 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1474 Lele-ChrLele07 8994097 8998851 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1413 05 8933915 8941455 Lele07g1474 07 8994097 8998851 hybridization
Lele06g1272 06 8109332 8119677 Lele07g1474 07 8994097 8998851 hybridization