Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1437 ATGGACAAGTTGAACCTAGCTCAACTGGGTGAGAAGCTGAAGACAAGTGGAGCTCAAATGGGTCGAATTGTTAGTGACAAAATGAAGGAAATTTTGCAAACCCCAACTCCTGAATCAAAGATGGTTGACGAAGCAACATCGGAGATCCTAGAGGAACCCAACTGGGGCATGAATTTGAGGATATGTGCAATGATCAATAGTGGAGAGTTTAATGGACCCGAGATTGTGAAGGCCATAAAGAAGAAGATTTCAAGCAAGAACTCAGTGAGCCAGAGGCTCAGTCTTGACTTGCTGGAAGCCTGTGCTATGAATTGTGAGAAAGTGTTTTCTGAGGTGGCATCAGAGAAGGTGCTTGAAGATATGGTTCGAATGATTGATAATCCGCAAACAGATCATCAGAATAGAAGAAGGGCTTTGCAGTTGATCAGGGCTTGGGGAGAGTCAGAGGATCTTGCCTATCTACCAGGGTTTCGTCAAACATATATGAGTCTGAAAGGAAGAAGTATGCCTCTGGAAACAGATGGAGTAAATCCACATATGCCATATTCCTTGGAGTCTCATGTACACGAAGATTCATTAGATCCTCCTGAAAGTTATCCTATTCCTGATGCTGCATTGCATGGGGTGAATGGATCTGCTTTCTCTTCTAATCCCAGAAGCCTATCAGTTGAAGAAAAGAAGGAGCATCTTGTCATTGCTCGAAACAGTCTTGAAATACTCTCTACCATATTAAATTCTGGAGCAGAGCCAAAATTGTTAAAGGAAGATGTTACCGTGAGCTTGTTGGAAAGGTGTAGGCAGTCACTGTCTGTCATTAAGGTGATTGTGGAAAGCACCACTGATGATGAGGGAACACTTTTTGAGGCTTTGAACCTCAATGATGAGCTGCAACAGGTACTTTCCAAGTACGAGGAGCTGGAAGCTGCCCAAGATTCTGGAGCACAACCACCCCTAGTTACAGATGCCACAAAGCATGTTGCAGAAGCCGTTCAAAATCCCGTCGCCCCACCTGAAAGCTTTGACGGCGATGAATCTGGTGAGCCAGATGCTTTTGAGAGACTTCAAAGGAAGGCCCCCAATAAGTCTGACGCCTCTGAGGTCAATTCTACTGCTGTTGTTGATAGTCACTGGGAGGCCAACACAACGAATTGCGCAAAAGAGAGGGATGCTGAATCAGACAGCAAGAGAAATGCTGAATGA 1200 0.4475 MDKLNLAQLGEKLKTSGAQMGRIVSDKMKEILQTPTPESKMVDEATSEILEEPNWGMNLRICAMINSGEFNGPEIVKAIKKKISSKNSVSQRLSLDLLEACAMNCEKVFSEVASEKVLEDMVRMIDNPQTDHQNRRRALQLIRAWGESEDLAYLPGFRQTYMSLKGRSMPLETDGVNPHMPYSLESHVHEDSLDPPESYPIPDAALHGVNGSAFSSNPRSLSVEEKKEHLVIARNSLEILSTILNSGAEPKLLKEDVTVSLLERCRQSLSVIKVIVESTTDDEGTLFEALNLNDELQQVLSKYEELEAAQDSGAQPPLVTDATKHVAEAVQNPVAPPESFDGDESGEPDAFERLQRKAPNKSDASEVNSTAVVDSHWEANTTNCAKERDAESDSKRNAE 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1437 399 MobiDBLite consensus disorder prediction 346 360 - -
Lele07g1437 399 Pfam GAT domain 234 307 IPR004152 GO:0035091|GO:0043130
Lele07g1437 399 MobiDBLite consensus disorder prediction 381 399 - -
Lele07g1437 399 Gene3D - 25 181 IPR008942 -
Lele07g1437 399 PANTHER TOM1-LIKE PROTEIN 1 1 379 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lele07g1437 399 Gene3D - 215 310 IPR038425 -
Lele07g1437 399 MobiDBLite consensus disorder prediction 328 399 - -
Lele07g1437 399 ProSiteProfiles GAT domain profile. 221 308 IPR004152 GO:0035091|GO:0043130
Lele07g1437 399 Pfam VHS domain 39 147 IPR002014 GO:0035091|GO:0043130
Lele07g1437 399 Coils Coil 286 309 - -
Lele07g1437 399 CDD VHS 39 165 - -
Lele07g1437 399 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Lele07g1437 399 MobiDBLite consensus disorder prediction 361 380 - -
Lele07g1437 399 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Lele07g1437 399 SUPERFAMILY GAT-like domain 195 307 - -
Lele07g1437 399 SUPERFAMILY ENTH/VHS domain 34 167 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1437 Lele-ChrLele07 8721881 8724324 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1437 07 8721881 8724324 Lele07g1437 07 8721881 8724324 ECH
Lele05g1374 05 8661039 8663620 Lele07g1437 07 8721881 8724324 hybridization
Lele06g1237 06 7855911 7858266 Lele07g1437 07 8721881 8724324 hybridization