Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1375 ATGGGCATCTCCCGTTTCGGCTCTTACCCACATAGGTGCCCTCGCTATTTCTTATGTTTGGCTGGCTCTTTTGAGAGTTTGGGAAGTAGAAAGTCTCAGTTGGACGTGCTGAAGCTTGCCAGCATCCTATTAATGGAGAATTCATCTGATGCGCTTGGCTCCAAAGGCTTGATTAAAAAAATTGAATTTGTGAGGATCATCATTCAGTTCCTATACTCTTTAGGGTATAGTAAGTCTGCATCATGCTTGGAATTGGAATCTGGTATTTCATTCAAGTCTGCAGAATTTCAGTTTCTTGAATCACAAATACTTAATGGGGATTGGGATGGTTGCGTCAGCACTCTTAATTTAATAAAGGATATGATTGATGAAACAAGAGAATCCGCTCTGTTTCTTGTCTTCAGACAGTGTCTTCTGGAGTATTTGAGTTGTGGCCAAGATTCTTTAGCTTTGAATGTATTAAGGAAACAGGTCGCTGCATTACATGTGGACAAATGCAAGGTTCACAGTCTAGCCAATAGCATGCTCTCCTTGAAGGATACGGAGTTAGGTTTAATAGATAATACCACTGTACACGATTTGCGAAGAAAGTTGTTAACTGACTTGGAGAAATTGCTCCCTCCTCCAATTACAGTACCTGAAAGAAGGCTGGAGCATTTAGTAGAAACTACTCTTACTTCCTGGATTGATTCTTGTATGTATCACAGTTCATCAAGTCCAATTTCACTTTGTGAGGACCATTGTTGTAGTCGAGATCTCATTCCTACTGAAACCACTCAGATCTTGACTGGGCATAAAAATGAAGTTTGGTTTGTGCAGTTCTCTAATAATGGGGAGTACCTTGCCTCTTCATCTAATGACTGTACAGCCATCATATGGAAGGTGATGGAAGATGGGAACTTGGCACTGAAACACACACTACAAGGTCACCAAAATCCTGTATCTTTTGTGGCATGGAGTCCTGATGACACTAAGTTGCTCACATGTGGGAATGCAGAAGTCTTGAAACTGTGGGATGTTGAAACAGGTACTTGCAAGCACACATTTGCGAGTCATGGCTTCGTTGTGAGCTCATGTGCCTGGTTTCCCAACTCAAAGCATATTGTGTGTGGCAGCTCCGACCCTGAAAAGGGCATCTGCATGTGGGATTGTGATGGAAATGAGCTAAAAGCTTGGAGAGGAGTTAGGATGCCCAAAGTTCTAGATCTTGCTGTTACATCAGATGGGGAGCACCTAATCACCATATTCATGGAAAAAGAGATTAGGATTTTGCATATGGGAACGAATACAGAGCGAGTCATCTCAGAGGAGCACCCGATCACGTCCCTTTCGGTTTCAGGAGATGGCAAGTTCTTCATTGTCAATCTAAACAGCCAGGAGATTCATATGTGGGACGTGGATGGGAAATGGGACAAACCATTGAGGTACCAGGGCCATATGCAACACAAATATGTGATAAGGTCTTGCTTTGGTGGATTGAATAGCACATTCATTGCCAGTGGTAGTGAGAATTCACAGGTCTACATTTGGAACCGCAGGAACTCAAAGCCAATTGAGGTTTTATATGGGCACACAATGACGGTGAATTGTGTGAGCTGGAACCCTAGAAGACCACAAATGTTGGCATCTGCAAGTGATGATTATACAATTCGTATATGGGGACCCAGCTTATAA 1674 0.4265 MGISRFGSYPHRCPRYFLCLAGSFESLGSRKSQLDVLKLASILLMENSSDALGSKGLIKKIEFVRIIIQFLYSLGYSKSASCLELESGISFKSAEFQFLESQILNGDWDGCVSTLNLIKDMIDETRESALFLVFRQCLLEYLSCGQDSLALNVLRKQVAALHVDKCKVHSLANSMLSLKDTELGLIDNTTVHDLRRKLLTDLEKLLPPPITVPERRLEHLVETTLTSWIDSCMYHSSSSPISLCEDHCCSRDLIPTETTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVMEDGNLALKHTLQGHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGTCKHTFASHGFVVSSCAWFPNSKHIVCGSSDPEKGICMWDCDGNELKAWRGVRMPKVLDLAVTSDGEHLITIFMEKEIRILHMGTNTERVISEEHPITSLSVSGDGKFFIVNLNSQEIHMWDVDGKWDKPLRYQGHMQHKYVIRSCFGGLNSTFIASGSENSQVYIWNRRNSKPIEVLYGHTMTVNCVSWNPRRPQMLASASDDYTIRIWGPSL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1375 557 ProSiteProfiles LIS1 homology (LisH) motif profile. 59 91 IPR006594 GO:0005515
Lele07g1375 557 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 295 - -
Lele07g1375 557 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 92 149 IPR006595 -
Lele07g1375 557 FunFam WD repeat-containing protein 26 homolog 249 554 - -
Lele07g1375 557 SMART ctlh 92 149 IPR006595 -
Lele07g1375 557 PANTHER WD REPEAT PROTEIN 26-RELATED 46 555 - -
Lele07g1375 557 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 307 343 - -
Lele07g1375 557 SUPERFAMILY WD40 repeat-like 252 553 IPR036322 GO:0005515
Lele07g1375 557 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 557 IPR001680 GO:0005515
Lele07g1375 557 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 295 IPR001680 GO:0005515
Lele07g1375 557 SMART WD40_4 255 294 IPR001680 GO:0005515
Lele07g1375 557 SMART WD40_4 514 554 IPR001680 GO:0005515
Lele07g1375 557 SMART WD40_4 385 425 IPR001680 GO:0005515
Lele07g1375 557 SMART WD40_4 427 465 IPR001680 GO:0005515
Lele07g1375 557 SMART WD40_4 469 511 IPR001680 GO:0005515
Lele07g1375 557 SMART WD40_4 342 383 IPR001680 GO:0005515
Lele07g1375 557 SMART WD40_4 300 339 IPR001680 GO:0005515
Lele07g1375 557 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 557 - -
Lele07g1375 557 CDD WD40 259 553 - -
Lele07g1375 557 SMART Lish 59 91 IPR006594 GO:0005515
Lele07g1375 557 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Lele07g1375 557 Pfam WD domain, G-beta repeat 343 382 IPR001680 GO:0005515
Lele07g1375 557 Pfam WD domain, G-beta repeat 476 511 IPR001680 GO:0005515
Lele07g1375 557 Pfam WD domain, G-beta repeat 516 553 IPR001680 GO:0005515
Lele07g1375 557 Pfam WD domain, G-beta repeat 304 339 IPR001680 GO:0005515
Lele07g1375 557 Pfam WD domain, G-beta repeat 258 294 IPR001680 GO:0005515
Lele07g1375 557 Gene3D - 253 554 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1375 Lele-ChrLele07 8359589 8364641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1375 226 418 Miscellaneous Gene Families AT5G08390 28.205 5.69e-16 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1375 07 8359589 8364641 Lele07g1375 07 8359589 8364641 ECH
Lele05g1325 05 8304140 8309404 Lele07g1375 07 8359589 8364641 hybridization
Lele06g1186 06 7442144 7450199 Lele07g1375 07 8359589 8364641 hybridization