Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1312 ATGAAGCATGATTACGCCTTTGTTGAATTTGGTGATCACCGAGATGCAGATGATGCAAGATATAACTTAGATGGTCGTGATGTGGATGGAAGTCGCATCATTGTCGAATTTGCAAAAGGGGGTCATCGTGGTTTCCGAGAATACTCGGTTAGAGGTCCTCCTCCTGGATCTGGGCGCTGCTTTAACTGTGGTCTTGATGGCCACTGGGCTCGGGATTGCAAAGCTGGGGACTGGAAGAACAAATGTTACCGCTGTGGGGAAAGAGGTCACATAGAACGAAACTGCAAGAATAGTCCCAAGAAACTCAGTGGTCATGGACGAAGTTATTCCCGTTCGCCTGTCAGGTCACCTTCTCCTCGTCGTGGCAGAAGCCGTGATCAAAGTTATAGCCGAGATTGCAGCTACAGCCGATCAAGGTCCCCTGTCCACAGAGAACGTAGCTCTGTTCATGAAGATAGATCAGAGTCTCCCCGCTACAGAAGCCCAGGACCCAATAATAGTCCTCCACCTGCCAAGACAAGGATCGATGGCCCTACTTATGATGAAGGCAATCAACAGAAGGAGAGAAGGGACATATCTCCTGAGAATGTTGGGCGGGCCACCCAGCAAGATGGTGACTATGGTGACGGTCCTAGAAGAAGGAGCAGAAGTAGAAGCCCTGTAAGTCCAAAAACTAATGGCAGTGGCCGCAGTGCTAGCCCGAGGGATGATAGGAGCCCCATTGATGATGATGATGACACCCGCCGTTCCCCTAGGGGCAGCGAGTCCCCTTAA 774 0.509 MKHDYAFVEFGDHRDADDARYNLDGRDVDGSRIIVEFAKGGHRGFREYSVRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSGHGRSYSRSPVRSPSPRRGRSRDQSYSRDCSYSRSRSPVHRERSSVHEDRSESPRYRSPGPNNSPPPAKTRIDGPTYDEGNQQKERRDISPENVGRATQQDGDYGDGPRRRSRSRSPVSPKTNGSGRSASPRDDRSPIDDDDDTRRSPRGSESP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1312 257 Gene3D - 50 78 - -
Lele07g1312 257 Gene3D - 79 125 - -
Lele07g1312 257 MobiDBLite consensus disorder prediction 93 257 - -
Lele07g1312 257 Gene3D - 1 47 IPR012677 -
Lele07g1312 257 MobiDBLite consensus disorder prediction 181 195 - -
Lele07g1312 257 SUPERFAMILY Retrovirus zinc finger-like domains 53 98 IPR036875 GO:0003676|GO:0008270
Lele07g1312 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 33 IPR000504 GO:0003723
Lele07g1312 257 Pfam Zinc knuckle 80 97 IPR001878 GO:0003676|GO:0008270
Lele07g1312 257 Pfam Zinc knuckle 59 74 IPR001878 GO:0003676|GO:0008270
Lele07g1312 257 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 50 78 - -
Lele07g1312 257 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 160 - -
Lele07g1312 257 SMART c2hcfinal6 59 75 IPR001878 GO:0003676|GO:0008270
Lele07g1312 257 SMART c2hcfinal6 81 97 IPR001878 GO:0003676|GO:0008270
Lele07g1312 257 SUPERFAMILY RNA-binding domain, RBD 4 59 IPR035979 GO:0003676
Lele07g1312 257 ProSiteProfiles Zinc finger CCHC-type profile. 81 97 IPR001878 GO:0003676|GO:0008270
Lele07g1312 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 40 IPR000504 GO:0003723
Lele07g1312 257 ProSiteProfiles Zinc finger CCHC-type profile. 59 74 IPR001878 GO:0003676|GO:0008270
Lele07g1312 257 MobiDBLite consensus disorder prediction 101 117 - -
Lele07g1312 257 MobiDBLite consensus disorder prediction 119 158 - -
Lele07g1312 257 MobiDBLite consensus disorder prediction 235 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1312 Lele-ChrLele07 7935912 7937901 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1265 05 7894593 7898134 Lele07g1312 07 7935912 7937901 hybridization
Lele06g1131 06 7019682 7027013 Lele07g1312 07 7935912 7937901 hybridization