Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1232 ATGGTAGCTGCAAAGAATTTGTTTAGTTCATCCTCGTTTCCATCAAGAGCTAATCACTGGAGCGGTCCTCCCTCGTCTTGTTCATCGTCTTCTTTAGTTTTCACATTTCATGAACAAGCCACTCCCGCAGTTACCTCTAGGTCTGCTAGTTTTGCTGCTCAGCATTTTCCCGCCTCGGTTCTTCTACAAGAGCTACGTGATGAGTGTAGGCCTATACTGCGCATGCATAAGGAAGAAAAGACATCCCAGGCATCATTAAATACAAAGCATATGGATATGGCCTTAGTTCGTGAAGACAATAATCCTGGCAATGCTGATCAGCTAGTGCATGACTTTAAGCAGCAATTGCAAATTTGGCCACGTTTACGGAACTTGTTGACTTCCTTACCAGCAGAGGAAATTGAAACATCTTCAACTCTGCAGCCTGTTACAATTGACTCAGAGAATCCTGTAGAAGTTGAAGAGCATGATGCAATTGCTCTTGCTAGGCAAGCATTGTCAGCCTCAAAACAAGCTGCCTTGATAGCTGGAGACTTGAAATCAATCAAAGCTGATGATGATGTTTTACCTCCTATAGGTTTGGCCTCCACAAGTTTTGATGGCATTTTACTTGGAAAGAATAGAACTGTGAGGTCAACACGGCTTATAGAGAGACAATTAAAGAAGAGAAAAAAATCAAAAGCAAAAGTCTTAGATGATGAAAGCTATCTTTCTAAAAAGGCTGAAGTAAAAGGAAGGTTACATGTAGAAAAGAAGATAAATGAAGGGTTTGATCAAAATGATCCCTTGCGCTTGTTCCTATGGGGTCCTGAAGCAAAACAACTTTTGACTCTTGAAGAAGAATCTCAATTGATTCTTCAGCTACAGGATTTATTGAGGTTGGAAGGAGTAAAGAGAAAACTTCAAGCACAATTTGGGCGGGAACCAACTTTGGCTGAGTGGGCTGATGGTGTGGACCTTACCTGTCAATCCCTGCAGTTACAGCTTTATTCTGGTAACAGCAGCAGAGAGAAGCTGATTTATGCAAATTTACGACTGGTAGTTCACATTGCTAAACATTATCAGGGGCGTGGTCTCAGTTTTCAGGACTTATTGCAGGAGGGAAGTATGGGGCTTATGAAGAGTGTTGAGAAGTTTAAACCCCAAGCAGGCTGTCGTTTCGGTACTTATGCCTACTGGTGGATAAGGCAAACAATTAGGAAGGCCATATTTCAACATTCCAGGACAATTCGTCTGCCGGAGAATGTATATACCCTTTTGGGAAAGGTATCAGAGGCAAAGAAATTGTACATTCGAGAAGGAAACCTACATCCCACCAAGGAGGAACTAGCAAGAAGAGTAGGAATTACAGTAGACAAGTTAGAAAAGTTGCTATATGTTGCAAGAATTCCAATTTCGATGCAACAAACAGTGTGGGCAGACCAAGATACCACTTTCCAGGAGGTTACTGCAGACACAGCAATTGAGGTCCCAGATGTGAGTGTTGGAAAACAGATGATGAGACGGCATGTGCGAAACCTCTTAAGCATCTTGAGCCCAAAAGAAAGGAGGATAATCCGGCTAAGATTCGGTATCGAGGATGGCGAACAGAAGTCATTATCAGAGATTGGAAACACGTTTGGTCTATCCAAGGAAAGAGTTCGACAGTTAGAGAGCCGAGCATTGTACAAGCTGAAGCAGTGCCTTGGCAGCCAAGGACTTGATGCATATGCAGAATTGCTAGTGTAG 1728 0.4265 MVAAKNLFSSSSFPSRANHWSGPPSSCSSSSLVFTFHEQATPAVTSRSASFAAQHFPASVLLQELRDECRPILRMHKEEKTSQASLNTKHMDMALVREDNNPGNADQLVHDFKQQLQIWPRLRNLLTSLPAEEIETSSTLQPVTIDSENPVEVEEHDAIALARQALSASKQAALIAGDLKSIKADDDVLPPIGLASTSFDGILLGKNRTVRSTRLIERQLKKRKKSKAKVLDDESYLSKKAEVKGRLHVEKKINEGFDQNDPLRLFLWGPEAKQLLTLEEESQLILQLQDLLRLEGVKRKLQAQFGREPTLAEWADGVDLTCQSLQLQLYSGNSSREKLIYANLRLVVHIAKHYQGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVYTLLGKVSEAKKLYIREGNLHPTKEELARRVGITVDKLEKLLYVARIPISMQQTVWADQDTTFQEVTADTAIEVPDVSVGKQMMRRHVRNLLSILSPKERRIIRLRFGIEDGEQKSLSEIGNTFGLSKERVRQLESRALYKLKQCLGSQGLDAYAELLV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1232 575 Pfam Sigma-70 region 2 340 408 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 Pfam Sigma-70 region 3 419 492 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 472 570 IPR013324 -
Lele07g1232 575 PIRSF Sigma_factor_SigC 1 575 IPR016262 -
Lele07g1232 575 Gene3D - 203 408 - -
Lele07g1232 575 CDD Sigma70_r4 501 559 - -
Lele07g1232 575 Gene3D - 412 489 IPR036388 -
Lele07g1232 575 ProSitePatterns Sigma-70 factors family signature 1. 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 260 409 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 PRINTS Major sigma-70 factor signature 387 395 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 PRINTS Major sigma-70 factor signature 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 PRINTS Major sigma-70 factor signature 511 523 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 PRINTS Major sigma-70 factor signature 547 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 PRINTS Major sigma-70 factor signature 532 547 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 MobiDBLite consensus disorder prediction 1 24 - -
Lele07g1232 575 Pfam Sigma-70, region 4 507 560 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 Gene3D - 494 574 IPR036388 -
Lele07g1232 575 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 147 571 - -
Lele07g1232 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 412 485 IPR013324 -
Lele07g1232 575 ProSitePatterns Sigma-70 factors family signature 2. 532 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lele07g1232 575 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 335 562 IPR014284 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1232 Lele-ChrLele07 7468557 7472620 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1232 07 7468557 7472620 Lele07g1232 07 7468557 7472620 ECH
Lele05g1188 05 7450330 7462527 Lele07g1232 07 7468557 7472620 hybridization
Lele06g1056 06 6567135 6570942 Lele07g1232 07 7468557 7472620 hybridization