Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1084 ATGACCATGCAAGGCCACGTAGAGATAAAACCAGGGGTCCACACCTACGTTGCTGAGTGGCCAATCTATGCTCTGGCATGGTCTTCACGTCGCGACAAAAATCCACGCCTTGCCATAGGTAGTTACATAGAAGACCACATGAACAAGGTCGAACTCGTTCACTTCAACCACGAGACATTGAATTACAGCACTCACCCTAATCTGGTGTTGGACCATCCTTATGCTCCAACAAACATCATGTTCTTCCCCTCGGAGGCTGACACGAATCCCGACATCATCGCCACCTCCGGCGACTACCTAAGACTTTGGGACATACACGACGATCGGATTGAGCTCAAGTCCCTCCTAAGCGGCAACAAAGTCAGAGATAACTCAGCCATAACCTCGTTCGACTGGGCAGAGTTCGACACGCGCCGTGTGGCTGCATCAAGCGTGGACATGACATGCACCATATGGGATATCGAGAAGGAAGCTTTGGACACACAATTAGTGGCACATGACAAAGAAGTTTACGACATATCATGGGGTGGTTTTAACGTGTTTGCTTCTGTGTCTGGGGATGGTTCCGTGAGAGTTTTTGACCTGAGGGACAAAGAAAGATCGACCATAATATTTGAAAACCCAGAACAAGATTGTCCTCTGCTACGCCTGGAATGGAATAAAGGGGATCCGAGGTTTATAGCAACGGTCGGAATGGACAGTAATAAAGTGGTGATAATGGATATTAGGCAACCAACCACGCCAGTGATGGAATTGAATAAGCATAAGGCAAGTGTTAATGCTATATCGTGGTCCCCACAAATGGGACGCCAGCTTTGCTCTTGTGGCGATGATTCAAGGGCTTTGATTTGGGACGTGGTGGGAACCGGGTTTCAAGCAAGGAATAATAATAATGGTGGTGGTGATGACGTGAAGCCAGATTTGTGTTATGAATCAACGGCTGAGATCAATCAAGTTCGATGGTCTCCTGTTCAGATGGATTGGATTGCCCTTGCTTTCGTGAATATGTTACAGCTTTTGAAGGTGTAG 1029 0.4733 MTMQGHVEIKPGVHTYVAEWPIYALAWSSRRDKNPRLAIGSYIEDHMNKVELVHFNHETLNYSTHPNLVLDHPYAPTNIMFFPSEADTNPDIIATSGDYLRLWDIHDDRIELKSLLSGNKVRDNSAITSFDWAEFDTRRVAASSVDMTCTIWDIEKEALDTQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKERSTIIFENPEQDCPLLRLEWNKGDPRFIATVGMDSNKVVIMDIRQPTTPVMELNKHKASVNAISWSPQMGRQLCSCGDDSRALIWDVVGTGFQARNNNNGGGDDVKPDLCYESTAEINQVRWSPVQMDWIALAFVNMLQLLKV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1084 342 Gene3D - 12 336 IPR015943 GO:0005515
Lele07g1084 342 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
Lele07g1084 342 PANTHER WD REPEAT CONTAINING PROTEIN 9 342 IPR045159 -
Lele07g1084 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 286 IPR001680 GO:0005515
Lele07g1084 342 SMART WD40_4 198 241 IPR001680 GO:0005515
Lele07g1084 342 SMART WD40_4 156 194 IPR001680 GO:0005515
Lele07g1084 342 SMART WD40_4 63 104 IPR001680 GO:0005515
Lele07g1084 342 SMART WD40_4 109 153 IPR001680 GO:0005515
Lele07g1084 342 SMART WD40_4 245 285 IPR001680 GO:0005515
Lele07g1084 342 Pfam WD domain, G-beta repeat 163 194 IPR001680 GO:0005515
Lele07g1084 342 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Lele07g1084 342 SUPERFAMILY WD40 repeat-like 17 330 IPR036322 GO:0005515
Lele07g1084 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 286 - -
Lele07g1084 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 203 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1084 Lele-ChrLele07 6551195 6552223 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1084 07 6551195 6552223 Lele07g1084 07 6551195 6552223 ECH
Lele05g1049 05 6522261 6523283 Lele07g1084 07 6551195 6552223 hybridization
Lele06g0907 06 5641891 5644069 Lele07g1084 07 6551195 6552223 hybridization