Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0907 ATGCTTGAACTGCAGATAGATACAGAACGACCAAACGCTGAAGATAAATATGACCGCAAATTGACCATTAGTTCCACCTTCCATTCTCTCTCTAGCTATGACATTGCTCTCGTATTTACTGCCTTGTTGCCCCAACCTCTTATCCTTCCATTCCTACACAACTTCCTCCCTTCTGTTCCCAGTGGCCTTTGTCCTCTGTGCGAAGCCTATTTCAGTGCCCTTCAGCTCATCTTCCCAGTAAATAATCTAGTATTGTTGACCATGCAAGGCCACGTAGAGATAAAACCTGGGGTCCACACCTACGTTGCTCAGTGGCCAATCTATGCTCTGGCATGGTCTTCACGTCGCGACAAAAATCCACGCCTTGCCATAGGTAGTTACATGGAAGACCACATGAACAAGGTCGAACTCGTTCGCTTCAACCACGAGACATTGAATTACAGCACTGACCCTAATCTGGTGTTGGACCATCCTTATGCGGCAACTAACATCATGTTCTTCCCCTCGGAGGCTGACACGAATCCCGACATCATAGCCACCTCCGGCGACTACCTAAGACTCTGGGAAATCCACGATGATCGGATTGAGCTCAAGTCCCTACTAAGCGGCAACAAAGTCAGAGATAACTCGGCCATAAGCTCATTCGACTGGGCAGAGTTCGACACGCGTCGTGTCGCGGCATCGAGCGTGGACACGACATGCACCATATGGGATATCGAGAAGGAAGCTTTGGATACGCAATTAGTGGCACATGACAAAGAAGTTTACGACATATCATGGGGTGGTTTTAACGTGTTTGCTTCAGTTTCTGGGGATGGTTCCGTGAGAGTTTTTGACTTGAGGGACAAAGAAAGATCGACCATAATCTTTGAAAACCCAGTACAAGATTGTCCTCTGCTACGCCTCGAATGGAATAAAGGGGACCCGAGGTTTATAGCTACGGTCGGAATGGACAGTAATAAAGTGGTGATAATGGATATTAGGCAACCGACCACGCCGGTGATGGAATTAAATAAGCATAAGGCAAGTGTTAATGCTATATCGTGGTCCCCACAAATGGGACGCCAGCTTTGCTCTTGTGGTGATGATTCAAGGGCTTTGATTTGGGACGTGGTGGGAACTGGGTTTCAGCCGAGGAATAATAATAATGGTGATGATGTGAAGCCAGATTTGTGTTATGAATCAACGGCTGAGATCAATCAAGTTCGGTGGTCTCCTGTTCAGAGGGATTGGATTGCCCTTGCTTTCGTGAATATGTTACAGCTTTTGAAGGTGTAG 1278 0.4703 MLELQIDTERPNAEDKYDRKLTISSTFHSLSSYDIALVFTALLPQPLILPFLHNFLPSVPSGLCPLCEAYFSALQLIFPVNNLVLLTMQGHVEIKPGVHTYVAQWPIYALAWSSRRDKNPRLAIGSYMEDHMNKVELVRFNHETLNYSTDPNLVLDHPYAATNIMFFPSEADTNPDIIATSGDYLRLWEIHDDRIELKSLLSGNKVRDNSAISSFDWAEFDTRRVAASSVDTTCTIWDIEKEALDTQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKERSTIIFENPVQDCPLLRLEWNKGDPRFIATVGMDSNKVVIMDIRQPTTPVMELNKHKASVNAISWSPQMGRQLCSCGDDSRALIWDVVGTGFQPRNNNNGDDVKPDLCYESTAEINQVRWSPVQRDWIALAFVNMLQLLKV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0907 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 371 - -
Lele06g0907 425 SMART WD40_4 194 238 IPR001680 GO:0005515
Lele06g0907 425 SMART WD40_4 330 370 IPR001680 GO:0005515
Lele06g0907 425 SMART WD40_4 285 326 IPR001680 GO:0005515
Lele06g0907 425 SMART WD40_4 241 279 IPR001680 GO:0005515
Lele06g0907 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 288 IPR001680 GO:0005515
Lele06g0907 425 Pfam WD domain, G-beta repeat 333 370 IPR001680 GO:0005515
Lele06g0907 425 Pfam WD domain, G-beta repeat 248 279 IPR001680 GO:0005515
Lele06g0907 425 SUPERFAMILY WD40 repeat-like 100 414 IPR036322 GO:0005515
Lele06g0907 425 ProSitePatterns Trp-Asp (WD) repeats signature. 357 371 IPR019775 -
Lele06g0907 425 Gene3D - 96 419 IPR015943 GO:0005515
Lele06g0907 425 PANTHER WD REPEAT CONTAINING PROTEIN 94 425 IPR045159 -
Lele06g0907 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 371 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0907 Lele-ChrLele06 5641891 5644069 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0907 06 5641891 5644069 Lele06g0907 06 5641891 5644069 ECH
Lele06g0907 06 5641891 5644069 Lele07g1084 07 6551195 6552223 hybridization
Lele06g0907 06 5641891 5644069 Lele08g0896 08 5669349 5670239 hybridization