Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1049 ATGCAAGGCCACGTAGAGATAAAACCAGGGGTCCACACCTACGTTGCTGAGTGGCCAATCTATGCTCTGGCATGGTCTTCACGTCGCGACAAAAATCCACGCCTTGCCATAGGTAGTTACATAGATGACCACATGAACAAGGTCGAACTCGTTCACTTCAACCACGAGACATTGAATTACAGCACTCACCCTAATCTGGTGTTGGACCATCCTTATGCTCCAACAAACATCATGTTCTTCCCCTCGGAGGCCGATACGAATCCCGACATCATCGCCACCTCCGGCGACTACCTAAGACTTTGGGACATACACGACGATCGGATCGAGCTCAAGTCCCTCCTAAGCGGCAACAAAGTCAGAGATAACTCAGCCATAACCTCGTTCGACTGGGCAGAGTTTGACACGCGCCGTGTGGCTGCATCAAGCGTGGACACGACATGCACCATATGGGATGTCGAGAAGGAAGCTTTGGACACACAATTAGTGGCACATGACAAAGAAGTTTACGACATATCATGGGGTGGTTTTAACGTGTTTGCTTCTGTGTCTGGGGATGGTTCCGTGAGAGTTTTTGACCTGAGGGACAAAGAAAGATCGACCATAATATTTGAAAACCCAGGACAAGATTGTCCTCTGTTACGCCTGGAATGGAATAAAGAGGATCCGAGGTTTATAGCAACGGTCGGAATGGACAGTAATAAGGTGGTGATAATGGATATTAGGCAACCAACCACACCAGTGATGGAATTGAATAAACATAAGGCAAGTGTTAATGCTATATCGTGGTCCCCACAAATGGGACGCCAGCTTTGCTCTTGTGGCGATGATTCAAGGGCTTTGATTTGGGACGTGGTGGGAACTGGGTTTCAAGCAAGGAATAATAATAGTGGTGGTGGTGATGACGTGAAGCCAGATTTATGTTATGAATCAACGGCTGAGATCAATCAAGTTCGATGGTCTCCTGTTCAGATGGATTGGATTGCCGTTGCTTTCGTGAATATGTTACAGCTTTTGAAGGTGTAG 1023 0.4721 MQGHVEIKPGVHTYVAEWPIYALAWSSRRDKNPRLAIGSYIDDHMNKVELVHFNHETLNYSTHPNLVLDHPYAPTNIMFFPSEADTNPDIIATSGDYLRLWDIHDDRIELKSLLSGNKVRDNSAITSFDWAEFDTRRVAASSVDTTCTIWDVEKEALDTQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKERSTIIFENPGQDCPLLRLEWNKEDPRFIATVGMDSNKVVIMDIRQPTTPVMELNKHKASVNAISWSPQMGRQLCSCGDDSRALIWDVVGTGFQARNNNSGGGDDVKPDLCYESTAEINQVRWSPVQMDWIAVAFVNMLQLLKV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1049 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 201 IPR001680 GO:0005515
Lele05g1049 340 SMART WD40_4 301 339 IPR001680 GO:0005515
Lele05g1049 340 SMART WD40_4 107 151 IPR001680 GO:0005515
Lele05g1049 340 SMART WD40_4 61 102 IPR001680 GO:0005515
Lele05g1049 340 SMART WD40_4 198 239 IPR001680 GO:0005515
Lele05g1049 340 SMART WD40_4 154 192 IPR001680 GO:0005515
Lele05g1049 340 SMART WD40_4 243 283 IPR001680 GO:0005515
Lele05g1049 340 ProSitePatterns Trp-Asp (WD) repeats signature. 270 284 IPR019775 -
Lele05g1049 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 284 IPR001680 GO:0005515
Lele05g1049 340 Gene3D - 10 337 IPR015943 GO:0005515
Lele05g1049 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 284 - -
Lele05g1049 340 Pfam WD domain, G-beta repeat 246 283 IPR001680 GO:0005515
Lele05g1049 340 Pfam WD domain, G-beta repeat 161 192 IPR001680 GO:0005515
Lele05g1049 340 PANTHER WD REPEAT CONTAINING PROTEIN 8 340 IPR045159 -
Lele05g1049 340 SUPERFAMILY WD40 repeat-like 15 330 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1049 Lele-ChrLele05 6522261 6523283 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1049 05 6522261 6523283 Lele05g1049 05 6522261 6523283 ECH
Lele05g1049 05 6522261 6523283 Lele07g1084 07 6551195 6552223 hybridization
Lele05g1049 05 6522261 6523283 Lele08g0896 08 5669349 5670239 hybridization