Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1028 ATGACCCGTTTCTCCGAGAAGATCCGCCTTTCTTCCCTGGTCGTCAAACCGACCCGTTTTCTCTCTCAGAAGCTTACTCTCCTCTCTCTCTCCACCTTCCATCTCTGCAAGTCCCTTGCTCGCTCCCTACTCTCCAAAACCCTCTCCTTCCTCACCATGGACAGTTTATTCTCGGATCACAATGATTACTTCTGGGACCTCGATTCCCGTCCACAACGTCGCTTCGTCCGAGAAGAAGAGCCTCAATTGGAGAATGAGCCCCTCTACTTGGTTTTCTACAGGTGGTGGAAGGAAGTACACGGGGACGCTGATCGAGTAGAACATGTCCTATACACAGTATCAACGAACTCTGATTTTGAGTCTGAATCAGAAATTGTTCTTCAGTTAAGGAAGGAAGACAACCAGGAGGAAACGATGAATAGTGAGGTGGGATCTTCAGGCCGTCAATATGCGTTGGTTCCTGAAGGTCTGTGGTTGCGTGCTCTTAAAAGGTGTAGTGATTATAGTTATGCAGTGAAGGATTTTTGGAGCCCCTTTTATACAGATGATTGTTTGCCAGATTTGTTCTCCTTGCAAGTTAGGATGTTTGTTTCATGGGAAACAAATTCATTGGTAGCAAAGATAAGCCAAAAGGAAAATACGGTTGATGTCTACATGAAAGCCTGCAATATTTTCAGCTCTGAATATAACCCAGTACACATTTTGGACTTCTCAGGCCAGACAACTCAATTTTTCATAGACGATAATGAGTATTCTGGGCAAGTTGAAAAAGGGGTTCTCTTGGAGCTGCAAGTTTATGGACTTTCTGATTCTATAAAGGTTAATGGAAGCAATGAGATGTTTGAAGATAGATCTACAGTGGGATGTTCGTCTCTCCGTGTCTCTGTTATGATGAATGGGACCACTCACAATGTGAATTCCAATGTAACATCTATGAACTCCTTTCAAAGGAGTAGCTATAAAGCAGTTGGTTCTTTGGGCTTGACAGGATTGCAGAATTTTGGAAACACGTGTTTTATGAATAGTGCTATTCAATGTCTGGTTCACACCCCCAAGCTTGTTGACTATTTCCTAGGAGATTACCGGAAAGAAATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTCGGGGATTTACTTAGAAAGTTGTGGTTTCCTGGAGCAAGGCCCGTGGCACCAAGAACATTCAAGATGAAGCTTGCTAATTTTGCGCCTCAGTTTAGTGGTTATAACCAGCATGATTCTCAAGAACTTCTTGCCTTTTTGTTGGATGGACTGCATGAGGACCTTAATCGTGTAAAGCGCAAACCATATCATGAAGTCAAAGATGAAGATGGTCGTCCGGATGAAGAAGTGGCAGAAGAATATTGGCATAATCACCTTGCTCGCAACGACTCCATAACAGTTGATTTGTGCCAAGGTCAGTTCCGTTCAACATTGGTCTGCCCTGTTTGCAAGAAGGTTTCTATCACTTTTGACCCTTTTATGCACCTATCTTTGCCGTTACCTTCTGCAACAATGCGGAAAATTACTTTGACCGTCCTGAGCACTGATGGGATTGCCCTGCCTTCCACATTTACCTTAACATTACCCAAGAGTGGATTATTGAAGGATCTTATTGAGGCCTTAGGTGATGCATGTTCCTTAAGAGATGATGAGACGCTCTTGGTTGCTGAGATATACAGGAATCGTATCTGTCGTCTGTTGGAGGAACCGTCAGATTCATTAGCCTTGATTAGAGATGAGGACAAACTAGTTGCTTACCGATTGCCAAAAGATGAGGCTGGCCCCTTGGTTGTTTTCATGCATCAGCAGGCGACGAAGCAGTGCAGTTTGGGAAGGGAGACGTTGGTAGAAAGTTTGTTCGGCATTCCTATTGTGGCAAGGTTGCCAAATGTTTCCTGTGGATATGACATTCGCAGGGAGTTTCTGAAGTTAATTAATCCATTTCCGATGCCCTCTGACGATTTCTTAGATGAGCATGATAATGATATTGAAGTTAGTAAAAATAAGGAGTTGAGTGATGCCACTGGTTCTGCGTGCTTGGAACGTGATTCAGATTCAGATTTGGAGGCTGACTTTAAATTCTACTTAACTGCACGGCTAGGAATGGAGAATGTGGAGATAGAAATGGATAAACCATTATCATTCACACTGCTACCCAAGAAGCTGGAGGTTTCTGTCTTATGGTCTTATAAGATGATAGAAAAATATGATACATGCCTACTCAGCTCATTGCCTGAGGTTTTCAAGCCAAATTTATTCGCCAAGAGAACACAAGACTCTGTTTCTGTTTACAAGTGCCTTGAAGCATTCTTAAAAGAGGAGCCTCTTGGGCCAGATGACATGTGGTTCTGTCCTAAATGCAAAAAGCCTCAGCAAGCGACTAAAAAACTAGATCTTTGGAGATTACCTGAAATTCTTGTTGTTCATCTGAAGAGGTTTTCATTCAGCCGATACTTCAAGAAGAAGCTAGAAACATTTGTCGATTTCCCGATCAATGATTTGGACCTGTCAACATATGTTGCCCACAAGAATAGCCCAGCTTCCCCCCATTACGAGTTGTATGCAGTCAGCTGTCATTATGGAGGATTGGGAGGAGGTCATTATACAGCATTTGTCCGTTATGGACATGATAAATGGTACGAGTTTGATGATAGCAGGGTTGTCCCTGTGAGTGATGACATGGTAAAGACTTCTGCTGCTTACGTTCTTTTCTACAGAAAAGTTTAG 2748 0.4276 MTRFSEKIRLSSLVVKPTRFLSQKLTLLSLSTFHLCKSLARSLLSKTLSFLTMDSLFSDHNDYFWDLDSRPQRRFVREEEPQLENEPLYLVFYRWWKEVHGDADRVEHVLYTVSTNSDFESESEIVLQLRKEDNQEETMNSEVGSSGRQYALVPEGLWLRALKRCSDYSYAVKDFWSPFYTDDCLPDLFSLQVRMFVSWETNSLVAKISQKENTVDVYMKACNIFSSEYNPVHILDFSGQTTQFFIDDNEYSGQVEKGVLLELQVYGLSDSIKVNGSNEMFEDRSTVGCSSLRVSVMMNGTTHNVNSNVTSMNSFQRSSYKAVGSLGLTGLQNFGNTCFMNSAIQCLVHTPKLVDYFLGDYRKEINYENPLGMNGELALAFGDLLRKLWFPGARPVAPRTFKMKLANFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDEDGRPDEEVAEEYWHNHLARNDSITVDLCQGQFRSTLVCPVCKKVSITFDPFMHLSLPLPSATMRKITLTVLSTDGIALPSTFTLTLPKSGLLKDLIEALGDACSLRDDETLLVAEIYRNRICRLLEEPSDSLALIRDEDKLVAYRLPKDEAGPLVVFMHQQATKQCSLGRETLVESLFGIPIVARLPNVSCGYDIRREFLKLINPFPMPSDDFLDEHDNDIEVSKNKELSDATGSACLERDSDSDLEADFKFYLTARLGMENVEIEMDKPLSFTLLPKKLEVSVLWSYKMIEKYDTCLLSSLPEVFKPNLFAKRTQDSVSVYKCLEAFLKEEPLGPDDMWFCPKCKKPQQATKKLDLWRLPEILVVHLKRFSFSRYFKKKLETFVDFPINDLDLSTYVAHKNSPASPHYELYAVSCHYGGLGGGHYTAFVRYGHDKWYEFDDSRVVPVSDDMVKTSAAYVLFYRKV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1028 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 858 875 IPR018200 GO:0004843|GO:0006511
Lele07g1028 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 264 914 - -
Lele07g1028 915 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 329 915 IPR028889 -
Lele07g1028 915 CDD Peptidase_C19R 743 913 - -
Lele07g1028 915 SUPERFAMILY Cysteine proteinases 327 914 IPR038765 -
Lele07g1028 915 Pfam Ubiquitin carboxyl-terminal hydrolase 329 912 IPR001394 GO:0004843|GO:0016579
Lele07g1028 915 Gene3D Cysteine proteinases 581 915 - -
Lele07g1028 915 Gene3D Cysteine proteinases 314 532 - -
Lele07g1028 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 330 345 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1028 Lele-ChrLele07 6186971 6193829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1028 758 915 Miscellaneous Gene Families AT4G31670 34.161 1.34e-18 89.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0993 05 6126649 6132868 Lele07g1028 07 6186971 6193829 hybridization
Lele06g0852 06 5280699 5287225 Lele07g1028 07 6186971 6193829 hybridization