Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1616 ATGAAAGATCCAGTTCCACGTTTCAGCAAACAAGCCAGGATCTTGGGAGACAAGATGGCTACAATAGCGGAACCTCTGTATCCCATAGCAGTTTTGATCGATGAGCTAAAGAACGATGATATCCTCCTTAGGCTAAACTCGATCCGGAAACTATCCACAATTGCACGTGTACTTGGGGAGGAAAGGACCAGGAAGGAATTGATTCCCTTTCTCAGTGAGAACAATGACGATGATGATGAGGTGCTTCTAGCAATGGCAGAGGAGTTGGGGGCTTTTGTCCCTTATGTTGGAGGTGTAGAACATGCCAATGTGCTACTACCTCCATTAGAAGCTCTCTGTTCGGTTGAGGAAACCTGCGTGAGGGACAAAGCAGTGGAGTCACTTTGTAGAATTGGAGCTCGGATGAGAGAAAAAGACTTGGTCGAGTACTTCATTCCCCTGGTTAAGAGACTGGCTGCCGGTGAGTGGTTCACAGCACGAGTTTCCTCATGTGGTTTGTTTCATCTGGCTTACCCTAGTGCACCAGAGGCCTTAAAAACTGAGCTGAGAACTATGTATGGTCAGCTGTGTCAAGATGATACGCCAATGGTTAGAAGATCTGCTGCAACAAATCTGGGAAAATTTGCTGCCACTGTTGAAGTTACTCATTTGAAAACCAACATCATGCCCATATTTGAGGATCTCACACAAGATGAACAAGATTCTGTTCGGTTACTTGCTGTTGAAGGCTGTGCAGCTCTTGGGAAATTGTTGGATCCTCAAGATTCTGTGACAATTATTCTTCCTATCATGATTAATTTCTCCCAGGACAAGTCATGGCGTGTTCGATACATGGTTGCTAATCAACTATATGAGCTCTGTGAAGCTGTTGGTCCTGAACCTACCAAGTCAGACTTGCTTCCTGCGTATGTTCTGCTACTGCGTGATCATGAGGCCGAAGTACGCATTGCTGCTGCTGGAAAAGTTACGAAGTTTTCTCGCATATTAAATCCAGAACTAACTATCCAGCATATTCTACCATGTGTGAAAGATTTATCAACTGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCAGTTATAATGGGGATGGCACCAGTTTTAGGGAAGGATGCAACAATTGAGCAGCTTCTGCCTATTTTCCTTTCACTTTTGAAAGATGAGTTTCCTGATGTCAGGCTGAACATTATCAGCAAGCTTGACCAAGTGAATCAGGTAATTGGCATTGACCTATTATCTCAGTCTCTATTACCAGCTATTGTTGAGCTTGCTGAGGATCGCCACTGGAGGGTTCGACTCGCAATCATAGAATATATACCCTTATTGGCAAGTCAGTTGGGTGTAGAATTTTTTGATGATAAGCTTGGAGCTCTTTGCATGCAATGGCTAAAGGACAAGGTCTACTCAATTCGTGATGCCGCTGCTATTAATGTAAAACGCTTAGCAGGAGAATTCGGACCAGACTGGGCAATGCAGCATATTATTCCTCAGGTTTTGGACATGATAAACGATTCAAACTATCTTTATCGAATGACCGTTCTTCATGCAATCTCTCTTTTGGCTCCTGTTCTGGGTTCAGAGATTACTTCTTCAAAACTGCTCCCTCTAGTCATAAAAGCATCAAAAGATAGGGTACCCAACATCAAATTCAATGTAGCTAAAGTTCTTCAGTCTATCATTCCGGTTGTAGATCAGTCTGTGGTTGAGAATACTATCCGTCCCTGTTTGGCTGAACTCAGTGAGGATCCTGATGTTGATGTTCGGTTTTTTGCCACCCAAGCACTGCAATCTAAGTCCAGCTAG 1803 0.437 MKDPVPRFSKQARILGDKMATIAEPLYPIAVLIDELKNDDILLRLNSIRKLSTIARVLGEERTRKELIPFLSENNDDDDEVLLAMAEELGAFVPYVGGVEHANVLLPPLEALCSVEETCVRDKAVESLCRIGARMREKDLVEYFIPLVKRLAAGEWFTARVSSCGLFHLAYPSAPEALKTELRTMYGQLCQDDTPMVRRSAATNLGKFAATVEVTHLKTNIMPIFEDLTQDEQDSVRLLAVEGCAALGKLLDPQDSVTIILPIMINFSQDKSWRVRYMVANQLYELCEAVGPEPTKSDLLPAYVLLLRDHEAEVRIAAAGKVTKFSRILNPELTIQHILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVEFFDDKLGALCMQWLKDKVYSIRDAAAINVKRLAGEFGPDWAMQHIIPQVLDMINDSNYLYRMTVLHAISLLAPVLGSEITSSKLLPLVIKASKDRVPNIKFNVAKVLQSIIPVVDQSVVENTIRPCLAELSEDPDVDVRFFATQALQSKSS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 572 600 IPR021133 -
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 221 258 IPR021133 -
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 377 415 IPR021133 -
Lele06g1616 600 Pfam HEAT repeat 260 288 IPR000357 GO:0005515
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 28 66 IPR021133 -
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 494 532 IPR021133 -
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 533 571 IPR021133 -
Lele06g1616 600 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 20 599 - -
Lele06g1616 600 SUPERFAMILY ARM repeat 27 597 IPR016024 -
Lele06g1616 600 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 23 597 - -
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 260 298 IPR021133 -
Lele06g1616 600 Pfam HEAT repeats 379 478 - -
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 416 454 IPR021133 -
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 182 220 IPR021133 -
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 299 337 IPR021133 -
Lele06g1616 600 ProSiteProfiles HEAT repeat profile. 338 376 IPR021133 -
Lele06g1616 600 Gene3D - 20 597 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1616 Lele-ChrLele06 10804369 10812059 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1616 06 10804369 10812059 Lele06g1616 06 10804369 10812059 ECH
Lele06g1616 06 10804369 10812059 Lele07g1822 07 11576920 11589909 hybridization
Lele06g1616 06 10804369 10812059 Lele08g1608 08 10698069 10704177 hybridization