Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1383 ATGAGTTCTGAGGCTCCCGCAACGATGACCAAGGGTGGCAGAGGCAAACCTAAGGCCAAATCCGTATCCAAGTCTCACAAAGCCGGCCTTCAGTTTCCCGTTGGTCGTGTCGGCCGTTTTCTCAAAGTCGGACGCTATGCCCAGCGCGTTGGGTCTGGGTCCCCTGTTTACCTTTCCGCTGTTCTTGAGTATCTTGCTGCTGAGGTTTTGGAATTGGCCGGGAATGCTGCCAGGGATAACAAGAAGACCAGGATTATACCTAGGCACATTCAACTTGCTGTGAGAAACGATGAAGAACTCAGCAAACTGTTGGGGTCTGTGACCATTGTGAGTGGGGGAGTGCTGCCGAAAATCCATCCCAATCTATTACCTAAGAAGAATCTAAAGGACAAGCCTGAAATTGGCACTGCGAGTCAGGAGTTTTAG 426 0.507 MSSEAPATMTKGGRGKPKAKSVSKSHKAGLQFPVGRVGRFLKVGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGSVTIVSGGVLPKIHPNLLPKKNLKDKPEIGTASQEF 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1383 141 Gene3D Histone, subunit A 8 133 IPR009072 GO:0046982
Lele06g1383 141 FunFam Histone H2A 7 136 - -
Lele06g1383 141 Pfam C-terminus of histone H2A 98 129 IPR032454 -
Lele06g1383 141 PANTHER HISTONE H2A 14 127 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1383 141 ProSitePatterns Histone H2A signature. 28 34 IPR032458 -
Lele06g1383 141 MobiDBLite consensus disorder prediction 1 27 - -
Lele06g1383 141 SUPERFAMILY Histone-fold 11 130 IPR009072 GO:0046982
Lele06g1383 141 SMART h2a4 9 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1383 141 CDD H2A 11 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1383 141 Pfam Core histone H2A/H2B/H3/H4 16 95 IPR007125 GO:0003677
Lele06g1383 141 PRINTS Histone H2A signature 64 77 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1383 141 PRINTS Histone H2A signature 49 64 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1383 141 PRINTS Histone H2A signature 78 92 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1383 141 PRINTS Histone H2A signature 106 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1383 141 PRINTS Histone H2A signature 20 42 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1383 Lele-ChrLele06 8905746 8906265 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1383 06 8905746 8906265 Lele06g1383 06 8905746 8906265 ECH
Lele06g1383 06 8905746 8906265 Lele07g1590 07 9834884 9837364 hybridization
Lele06g1383 06 8905746 8906265 Lele08g1379 08 8843608 8845975 hybridization