Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1590 ATGAATTCTGAGGTTCCCGTAACGATGACAAGGGGTGGCAGAGGCAAACCTAAGGCCAAATCCGTATCCAAGTCTCACAAAGCCGGCCTTCAGTTTCCCATTGGCCGGGTCGCTCGTTATCTCAAAGTCGGACGCTATGCTCAGCGTGTAGGATCTGGTTCCCCTGTTTACCTCTCTGCTGTTCTTGAGTATCTTGCTGCTGAGGTCTTGGAATTGGCTGGGAATGCTGCCAGGGATAACAAGAAGACCAGGATTATACCTAGGCACATTCAACTTGCTGTGAGAAACGATGAAGAACTCAGCAAATTGTTGGGGTCTGTCACCATTGTAAATGGGGGCGTTTTGCCGAAAATCCATTCCAGTTTATTACCTAAGAAGAATCTGAAGGGCAAGCCTGAAATCGGCTCTGCGAACATTTTTTCCAAAGCCGTCTACGCGACAATCAGTTCAACGGGATCGACCAAAGGTGGAAGGGGTAAGCCCAAATCCTCTAAATCTGTTTCTAGGTCTCAGAAGGCTGGTCTTCAATTTCCCGTTGGTCGCATCGCTCGCTTCCTCAAGGCCGGTAAGTACGCCGAACGTGTTGGTGCCGGCGCTCCCGTCTATTCCTCTGCCGTATTGGAATATCTTGCTGCTGAGGTTCTTGAGCTTGCTGGCAATGCTGCTAGAGATAACAAGAAGAATCGCATCGTTCCAAGGCATATTCAGCTTGCTGTACGTAATGACGAGGAGTTAAGTAAGCTCTTAGGATCTGTCACTATTGCCAATGGTGGCGTTTTGCCTAATATTCATCAAAATCTTCTGCCAAAGTCGACGGGTAAGGGGAAAGGCGATATTGGATCAGCATCCCAAGAATTCTAA 861 0.4832 MNSEVPVTMTRGGRGKPKAKSVSKSHKAGLQFPIGRVARYLKVGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGSVTIVNGGVLPKIHSSLLPKKNLKGKPEIGSANIFSKAVYATISSTGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYSSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQNLLPKSTGKGKGDIGSASQEF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1590 286 MobiDBLite consensus disorder prediction 150 172 - -
Lele07g1590 286 SMART h2a4 10 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 SMART h2a4 154 274 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 CDD H2A 13 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 CDD H2A 159 270 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 MobiDBLite consensus disorder prediction 1 27 - -
Lele07g1590 286 SUPERFAMILY Histone-fold 23 126 IPR009072 GO:0046982
Lele07g1590 286 Pfam C-terminus of histone H2A 243 276 IPR032454 -
Lele07g1590 286 Pfam C-terminus of histone H2A 98 131 IPR032454 -
Lele07g1590 286 ProSitePatterns Histone H2A signature. 173 179 IPR032458 -
Lele07g1590 286 Pfam Core histone H2A/H2B/H3/H4 145 240 IPR007125 GO:0003677
Lele07g1590 286 Pfam Core histone H2A/H2B/H3/H4 18 95 IPR007125 GO:0003677
Lele07g1590 286 PRINTS Histone H2A signature 209 222 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 PRINTS Histone H2A signature 223 237 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 PRINTS Histone H2A signature 165 187 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 PRINTS Histone H2A signature 194 209 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 PRINTS Histone H2A signature 251 269 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 FunFam Histone H2A 8 135 - -
Lele07g1590 286 PANTHER HISTONE H2A 159 271 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele07g1590 286 Gene3D Histone, subunit A 9 133 IPR009072 GO:0046982
Lele07g1590 286 Gene3D Histone, subunit A 152 278 IPR009072 GO:0046982
Lele07g1590 286 SUPERFAMILY Histone-fold 158 274 IPR009072 GO:0046982
Lele07g1590 286 FunFam Histone H2A 155 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1590 Lele-ChrLele07 9834884 9837364 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1590 07 9834884 9837364 Lele07g1590 07 9834884 9837364 ECH
Lele05g1532 05 9829208 9829731 Lele07g1590 07 9834884 9837364 hybridization
Lele06g1383 06 8905746 8906265 Lele07g1590 07 9834884 9837364 hybridization