Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1379 ATGACCAAGGGTGGCAGAGGCAAACCTAAGGGCAAATCCGTATCCAAGTCTCACAAAGCCGGCCTTCAGTTTCCCGTTGGCCGTGTCGCCCGTTTTCTCAAAGTCGGACGCTATGCCCACCGCGTTGGGTCTGGGTCCCCTGTTTACCTCTCCGCTGTTCTTGAGTATCTTGCTGCTGAGGTTTTGGAATTGGCTGGGAATGCTGCCAGGGATAACAAGAAGACCAGGATTATACCTAGGCACATTCAACTTGCTGTGAGAAACGATGAAGAGCTCAGCAAATTGTTGGGGTCTGTGACCATTGTGAGCGGGGGCGTGCTGCCGAAAATCCATCCCAATTTATTACCTAAGAAGAATCTAAAGGACAAGCCTGAAATTGGCTCTGCGAGTAAAACAGATAACAGGAAGAATCGCATTGTTCCAAGGCATATTCAGCTTGCTGTACGTAATGAGGAGGAGTTAAGTAAGCTCTTAGGATGTGTCACTATTGCCAATGGCATCAAAATCTTCTGCCAAAGTCGATGGGGAAGGGAAAAGGCGATATTGGATCAGCATCCCAAGAATCCTAAGATTCCACCACTCTGGAGTTAG 591 0.4839 MTKGGRGKPKGKSVSKSHKAGLQFPVGRVARFLKVGRYAHRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGSVTIVSGGVLPKIHPNLLPKKNLKDKPEIGSASKTDNRKNRIVPRHIQLAVRNEEELSKLLGCVTIANGIKIFCQSRWGREKAILDQHPKNPKIPPLWS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1379 196 FunFam Histone H2A 1 126 - -
Lele08g1379 196 Pfam Core histone H2A/H2B/H3/H4 10 87 IPR007125 GO:0003677
Lele08g1379 196 PANTHER HISTONE H2A 130 166 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1379 196 SMART h2a4 1 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1379 196 SUPERFAMILY Histone-fold 15 118 IPR009072 GO:0046982
Lele08g1379 196 Gene3D Histone, subunit A 127 173 IPR009072 GO:0046982
Lele08g1379 196 Gene3D Histone, subunit A 2 126 IPR009072 GO:0046982
Lele08g1379 196 CDD H2A 13 118 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1379 196 SUPERFAMILY Histone-fold 132 166 IPR009072 GO:0046982
Lele08g1379 196 PRINTS Histone H2A signature 70 84 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1379 196 PRINTS Histone H2A signature 41 56 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1379 196 PRINTS Histone H2A signature 98 116 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1379 196 PRINTS Histone H2A signature 12 34 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1379 196 PRINTS Histone H2A signature 56 69 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1379 196 ProSitePatterns Histone H2A signature. 20 26 IPR032458 -
Lele08g1379 196 Pfam C-terminus of histone H2A 90 121 IPR032454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1379 Lele-ChrLele08 8843608 8845975 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1379 08 8843608 8845975 Lele08g1379 08 8843608 8845975 ECH
Lele05g1532 05 9829208 9829731 Lele08g1379 08 8843608 8845975 hybridization
Lele06g1383 06 8905746 8906265 Lele08g1379 08 8843608 8845975 hybridization