LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g1187	ATGACGGGATTTCCTCGGCCTAATGATCAGACCCCACCTTCGTCCTCGTCTTCCTATAGTTCCAACAGCAGTGGAAAAAATGTATTTAATTTGCTAGCGCATAGAGAGATTTCTGCAAGATCAAAACAAGTGTCAAAACAGCACTGGGGAGAAGCTTCTGAACCAAAAACTGGTTCTTGCCCTCATCCTAAATATGATGCAGTGCGAGATTCGAAACGCAGTCTCCTCTCATGGGGTGAGGCAGAGTCATTGCGGCATTTATCAGCTAAATATTGTCCCTTGTTGCCTCCCCCACGATCTACTATTGCAGCAGCATTTAGTCCAGATGGAAAAGTGCTTGCATCGACACATGGTGACCATACTGTAAAGATAATTGATTGGGAAAATGGAAGTTGCTTAAATGTGTTGATTGGCCATAGGAGGACTCCTTGGGTGGTTAGGTTCCATCCATTGCAACCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGCTTATGGGATGCTAACACATCAAAATGCATTTTATTCCACCATTTCTATCGCCCCATCGCATCCATTGCTTTTCATGCTGGAGGGGAAATACTTGCGATTGCATCAGGCCACAAGCTGTACATATGGCACTACAACAAGAGAGGTGAAGGATCCTCACCAACATTTGTGTTAAAGACAAGGCGTTCACTTCGGGCTGTTCACTTTCACCCGCATGCAGCACCATATCTTTTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACACGGGCTACATCTCCTGGTTATTTACAATATCCTCCACCTGCTGTGATTGTTGCAAATATTCATTATAAGGAACATATTGCTTTTCCCAGCAGTGAACTACCTTATTTGTCGTTACCTTTTTTCTTCTTGCCTTCTTTTAATGGTGATGATTCAAGAACTGAAACACATAATGCTGGTCTTGTTGCTGGTTCGGAGAACATGCAAGTTGAATCTTCTGCATCAGCACAGTTTCAAACAGTCATAAATGCTACTGAGCAACATAATACAGTGTCTCCCATGGATACAGTCCCTGAGATTCCTACTAGCTCTCAAACTGGTACAGAATACGCTGTCCATAGTACCTTCTCTAATGGAATGGGAACTGGTATCGGTAACCTTGCTGTGGATGGTATGGAGACTGATGAAACAGTACCAGCTGAAGGAAGCCAGCATGGAAACCCTACAAATGTCTATTCTTTGAGTAATGTGCTGCATGGTTTATACAGACAAACAACAAATCATGAGGGTCTTTCTGACATGGGTCAATTTCACCGTTTCTTCCCCTCAAGAGACCCAAGTGGATGGGAGCTACCCTTTCTGCAAGGATGGTTAATGGGTCAAAGCCAAGTTGGTGTCCCCTTGGTGCTTCCTCATCTGAGTGGTAGTCGAGACAGCCTGGCTCAGATTGGTTCCTCCACCATGACATCTAATTTGTCCCCTCATGATGATGAAGCAACAACTTCATCTTCAGCTATTCCAGGAAGCACACGTATACCAGGACCTCAGGGGAGATCTGGTTTGCGGAGTCATTTTCCACAATCTCAAGTGCCTGCATCTGAATCTGGCAATATGGCCTCTTCCATCAATATCCCGCATGGTGGTACTGACATTCAAACCATTATAAGTCGGATTCATTCTGAACTTGCCACATCAGTGTCTGCAGCTGCTGCTTCAGAGCTGCCTTGCACGGTGAAGCTAAGAGTATGGTCACATGACATAAAGAATCCCTGTGCCCCACTAAATGCTGAAAGATGCCGTCTTACAATACCACATGCCGTCTTGTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGGTTTCTGGCTGCCTGTGTTGCATGCATGCTTCCTCATGTAGAAGCTGATTCAGGATTACAAACTCAAGTACAACATGAGTTGGTAGTGGCAACATCCCCAACACGACATCCAATCTCTGCTCACCAAGTTATGTACGAACTTCGCATATATTCCCTTGAGGGGGCAACATTTGGAATGGTGCTTGCATCACGAGCAATTAGAGCAGCTCACTGTCTGACTTCAATCCAGTTCTCACCCACATCTGAGCACATACTGCTTGCCTATGGTAGACGTCATGGATCTCTTCTTAAAAGCATTGTTATCGATGGAGAAACAACCCTGCCTATATATACTGTGTTAGAGGTATATAGAGTGTCAGATATGAAACTCGTCATGGTGCTTCCTAGTGCAGAGGATGAGGTCAATGTAGCATGCTTTCATCCTTTTCCTGGGAGAGGACTTGTTTATGGAACTAAGGAAGGAAAGCTTCGGGTCCTCCACTATGATGGAGCTCATGCGGTAAATGGCACTAAAGCAAGTTACTTACCTGAGGACAACATTATTGGAGTCAACTGA	2409	0.4471	MTGFPRPNDQTPPSSSSSYSSNSSGKNVFNLLAHREISARSKQVSKQHWGEASEPKTGSCPHPKYDAVRDSKRSLLSWGEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDWENGSCLNVLIGHRRTPWVVRFHPLQPHILASGSLDQEVRLWDANTSKCILFHHFYRPIASIAFHAGGEILAIASGHKLYIWHYNKRGEGSSPTFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTRATSPGYLQYPPPAVIVANIHYKEHIAFPSSELPYLSLPFFFLPSFNGDDSRTETHNAGLVAGSENMQVESSASAQFQTVINATEQHNTVSPMDTVPEIPTSSQTGTEYAVHSTFSNGMGTGIGNLAVDGMETDETVPAEGSQHGNPTNVYSLSNVLHGLYRQTTNHEGLSDMGQFHRFFPSRDPSGWELPFLQGWLMGQSQVGVPLVLPHLSGSRDSLAQIGSSTMTSNLSPHDDEATTSSSAIPGSTRIPGPQGRSGLRSHFPQSQVPASESGNMASSINIPHGGTDIQTIISRIHSELATSVSAAAASELPCTVKLRVWSHDIKNPCAPLNAERCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHVEADSGLQTQVQHELVVATSPTRHPISAHQVMYELRIYSLEGATFGMVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMKLVMVLPSAEDEVNVACFHPFPGRGLVYGTKEGKLRVLHYDGAHAVNGTKASYLPEDNIIGVN	802

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g1187	802	MobiDBLite	consensus disorder prediction	483	507	-	-
	Lele06g1187	802	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	136	174	-	-
	Lele06g1187	802	Pfam	WD domain, G-beta repeat	130	169	IPR001680	GO:0005515
	Lele06g1187	802	Pfam	WD domain, G-beta repeat	103	126	IPR001680	GO:0005515
	Lele06g1187	802	ProSiteProfiles	Trp-Asp (WD) repeats profile.	136	178	IPR001680	GO:0005515
	Lele06g1187	802	ProSitePatterns	Trp-Asp (WD) repeats signature.	156	170	IPR019775	-
	Lele06g1187	802	PANTHER	ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1	25	798	-	-
	Lele06g1187	802	MobiDBLite	consensus disorder prediction	518	540	-	-
	Lele06g1187	802	SUPERFAMILY	Quinoprotein alcohol dehydrogenase-like	98	780	IPR011047	-
	Lele06g1187	802	FunFam	Activating molecule in BECN1-regulated autophagy protein	83	263	-	-
	Lele06g1187	802	Gene3D	-	57	258	IPR015943	GO:0005515
	Lele06g1187	802	MobiDBLite	consensus disorder prediction	483	540	-	-
	Lele06g1187	802	MobiDBLite	consensus disorder prediction	39	66	-	-
	Lele06g1187	802	SMART	WD40_4	738	778	IPR001680	GO:0005515
	Lele06g1187	802	SMART	WD40_4	172	209	IPR001680	GO:0005515
	Lele06g1187	802	SMART	WD40_4	88	126	IPR001680	GO:0005515
	Lele06g1187	802	SMART	WD40_4	129	169	IPR001680	GO:0005515
	Lele06g1187	802	MobiDBLite	consensus disorder prediction	1	26	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g1187	Lele-ChrLele06	7450230	7456774	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g1187	89	242	Miscellaneous Gene Families	AT5G08390	29.630	3.98e-07	52.0

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele06g1187	06	7450230	7456774	Lele06g1187	06	7450230	7456774	ECH
	Lele06g1187	06	7450230	7456774	Lele07g1376	07	8372810	8379385	hybridization
	Lele06g1187	06	7450230	7456774	Lele08g1179	08	7445898	7452387	hybridization