Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0023 ATGTTTTTTTTCGATTGGTTTTATGGCATTCTAGCATCGCTTGGATTGTGGCAGAAGGAGGCCAAGATCTTGTTCTTGGGACTCGACAATGCAGGCAAAACCACATTACTCCATATGCTCAAAGACGAGAGATTAGTCCAGCATCAGCCAACACAGCATCCCACATCGGAAGAGTTGAGTATTGGGAAGATCAAGCTCAAGGCTTTTGATCTCGGGGGTCACCAAATTGCTAGAAGAGTTTGGAAAGATTACTATGCCAAGGTGGATGCAGTGGTGTATTTGGTGGATGCTTATGACAAGGAAAGATTTGCCGAGTCAAAGAAAGAACTGGATGCTCTGCTGTCGGACGAGGCATTGGCGAATGTACCATTCCTGATTCTTGGGAACAAGATTGATATACCATATGCTGGCTCAGAAGATGAATTGCGTTATCACTTGGGGCTGTCCAACTTCACCACCGGTAAGGGTAAGGTTAGCATGGCGGACTCAAATGTGCGCCCCGTGGAGGTTTTCATGTGCAGTATTGTGAGGAAAATGGGTTACGGAGATGGCTTCAAGTGGCTTTCTCAGTACATCAAATGA 582 0.4588 MFFFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKLKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLILGNKIDIPYAGSEDELRYHLGLSNFTTGKGKVSMADSNVRPVEVFMCSIVRKMGYGDGFKWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0023 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Lele06g0023 193 CDD Sar1 2 192 - -
Lele06g0023 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Lele06g0023 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Lele06g0023 193 Gene3D - 1 193 IPR027417 -
Lele06g0023 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Lele06g0023 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Lele06g0023 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Lele06g0023 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Lele06g0023 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Lele06g0023 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Lele06g0023 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Lele06g0023 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 135 IPR005225 GO:0005525
Lele06g0023 193 FunFam GTP-binding protein SAR1A 1 193 - -
Lele06g0023 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Lele06g0023 193 SMART arf_sub_2 4 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0023 Lele-ChrLele06 160034 162077 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0213 05 1175857 1183763 Lele06g0023 06 160034 162077 ECH
Lele06g0023 06 160034 162077 Lele06g0023 06 160034 162077 ECH
Lele06g0023 06 160034 162077 Lele07g0218 07 1199766 1201919 hybridization
Lele06g0023 06 160034 162077 Lele08g0025 08 154781 157688 hybridization