Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0213 ATGTTTATTTTCGATTGGTTTTATGGCATTCTAGCATCGCTTGGATTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGACTCGACAATGCAGGCAAAACCACATTACTTCATATGCTCAAAGACGAGAGATTAGTCCAGCATCAGCCGACACAGCATCCCACATCGGAAGAGTTGAGTATTGGGAAGATCAAGTTCAAGGCTTTTGATCTCGGGGGTCACCAGATTGCTAGGAGAGTTTGGAAAGATTACTATACCAAGGTGGATGCAGTGGTGTATTTGGTGGATGCTTATGACAAGGAAAGATTTGCCGAGTCAAAAAAAGAACTGGATGCTCTGCTGTCAGACGAGGCATTGGCGAATGTGCCATTCCTGATTCTTGGGAACAAGATTGATATACCATATGCTGCCTCAGAAGATGAATTGCGGTACCACTTAGGGCTGTCCAACTTCACCACCGGCAAGGGTAAGGTTAGCATGGCGGACTCAAATGTGCGTCCCATGGAGGTTTTCATGTGCAGTATTGTGAGGAAAATGGGTTACGGAGATGGCTTCAAGTGGCTTTCTCAGTGTTGTTCCTACAAATTCTTATCTTTGGTGAAAAAGAAAAGACAGAGACCACCTCTATGATCACACTCGCGTTCATTGAAGAGGGAGCAGGTAAAGATGTCGAGCTTCAGCATTTGGTTTGCTCTTGGGGCACTAGCTCTTGTATTTGTCTCATCGGTTTCGGCCGACGACGTGGTCGTGCTGACGGAAGCCAACTTTGATCAAGAAGTTGGCCAAGATCGCGCCGCTCTTGTCGAGTTCTACGCTTCCTGGTGTGGACACTGTAAAAGGCTCGCACCAGAGTATGAAAAACTGGGAGCAAGTTTTAAAAAGGCCAAATCCATTTTGATTGGGAAGGTAGATTGTGATGATCAAAAAAGCATTTGCAGCAAATATGGTGTCTCTGGTTATCCCACAATTCAATGGTTTCCTAAGGGATCTTTGGAACCAAAGAAGTATGAAGGGGCACGTACTGCAGAGGCCCTCGCTGAGTTTGTAAACAAAGAAGGAGGTACCAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTGGTTCTCACTTCAGATAACTTTGATCAGGTTGTATTGGATGAAACAAAAGACGTTCTGGTTGAGTTCTATGCTCCATGGTGTGGTCATTGTAAAGGCCTTGCCCCTACTTATGAGAAAGTTGCTACAGCATTCAAACTGGAGGAAGATGTTGTAATAGCCAATATTGACGCTGACCAACACAAAGATATTGCTGAGAAGTATGGTGTAAGTGGCTATCCTACTCTCAGATTTTTCCCAAGGAGCAATAAAGCTGGTGAAGATTATGATGGTGGCCGAGATTTGGATGACTTTGTAACTTTTATCAATGAGAAAAGTGGTACCAGCCGTGATGGAAAAGGACAGCTTACCTCTAAAGCTGGTTTAGTACCAACTCTGGATGGCTTGGTGAAGGATTTTGTGAGTGCTTCTAGTGATGAAAAGAAAGAGGTTTATTCTCGGCTCCAGGAGGAAGCTAAGAAACTTGAGGGTTCTGCTGCAAGATATGGCAATATCTACTTAAAAGCTGCTAAAAACTTCATTGAAAAAGGAGCTGACTATCCATCAAAGGAGATTCAAAGACTTGAGCGCATACTTGACAAGTCAGTCAACCCTGCAAAGGCAGATGAGCTCACTCTCAAGAAGAACGTCTTGTCTACGTTTGTTGCGTGA 1749 0.4431 MFIFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYTKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVSMADSNVRPMEVFMCSIVRKMGYGDGFKWLSQCCSYKFLSLVKKKRQRPPLXSHSRSLKREQVKMSSFSIWFALGALALVFVSSVSADDVVVLTEANFDQEVGQDRAALVEFYASWCGHCKRLAPEYEKLGASFKKAKSILIGKVDCDDQKSICSKYGVSGYPTIQWFPKGSLEPKKYEGARTAEALAEFVNKEGGTNVKIASVPSSVVVLTSDNFDQVVLDETKDVLVEFYAPWCGHCKGLAPTYEKVATAFKLEEDVVIANIDADQHKDIAEKYGVSGYPTLRFFPRSNKAGEDYDGGRDLDDFVTFINEKSGTSRDGKGQLTSKAGLVPTLDGLVKDFVSASSDEKKEVYSRLQEEAKKLEGSAARYGNIYLKAAKNFIEKGADYPSKEIQRLERILDKSVNPAKADELTLKKNVLSTFVA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0213 582 SUPERFAMILY ERP29 C domain-like 486 581 IPR036356 -
Lele05g0213 582 SUPERFAMILY Thioredoxin-like 363 474 IPR036249 -
Lele05g0213 582 ProSiteProfiles Thioredoxin domain profile. 358 473 IPR013766 -
Lele05g0213 582 TIGRFAM pdi_dom: protein disulfide-isomerase domain 369 471 IPR005788 GO:0003756
Lele05g0213 582 TIGRFAM pdi_dom: protein disulfide-isomerase domain 251 352 IPR005788 GO:0003756
Lele05g0213 582 Gene3D Glutaredoxin 359 485 - -
Lele05g0213 582 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Lele05g0213 582 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Lele05g0213 582 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Lele05g0213 582 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Lele05g0213 582 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Lele05g0213 582 SMART arf_sub_2 4 196 - -
Lele05g0213 582 CDD ERp29c 489 580 IPR011679 GO:0005783
Lele05g0213 582 Gene3D Glutaredoxin 241 358 - -
Lele05g0213 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 191 IPR027417 -
Lele05g0213 582 CDD PDI_a_ERp38 365 468 - -
Lele05g0213 582 ProSiteProfiles Thioredoxin domain profile. 230 354 IPR013766 -
Lele05g0213 582 FunFam GTP-binding protein SAR1A 1 193 - -
Lele05g0213 582 Pfam Thioredoxin 366 469 IPR013766 -
Lele05g0213 582 Pfam Thioredoxin 248 350 IPR013766 -
Lele05g0213 582 Pfam ADP-ribosylation factor family 8 191 IPR006689 GO:0003924|GO:0005525
Lele05g0213 582 FunFam Protein disulfide-isomerase A6 homolog 360 478 - -
Lele05g0213 582 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 487 580 IPR011679 GO:0005783
Lele05g0213 582 TIGRFAM small_GTP: small GTP-binding protein domain 19 135 IPR005225 GO:0005525
Lele05g0213 582 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 244 567 - -
Lele05g0213 582 Gene3D - 1 192 IPR027417 -
Lele05g0213 582 Coils Coil 504 524 - -
Lele05g0213 582 FunFam Protein disulfide-isomerase A6 homolog 241 359 - -
Lele05g0213 582 Gene3D - 486 582 IPR036356 -
Lele05g0213 582 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Lele05g0213 582 CDD PDI_a_ERp38 247 349 - -
Lele05g0213 582 ProSitePatterns Thioredoxin family active site. 386 404 IPR017937 -
Lele05g0213 582 CDD Sar1 2 191 - -
Lele05g0213 582 SUPERFAMILY Thioredoxin-like 246 354 IPR036249 -
Lele05g0213 582 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Lele05g0213 582 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0213 Lele-ChrLele05 1175857 1183763 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0213 05 1175857 1183763 Lele06g0023 06 160034 162077 ECH
Lele05g0213 05 1175857 1183763 Lele05g0213 05 1175857 1183763 ECH
Lele05g0213 05 1175857 1183763 Lele07g0218 07 1199766 1201919 hybridization
Lele05g0213 05 1175857 1183763 Lele08g0025 08 154781 157688 hybridization