Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1340 ATGGGTGTGATTGGAAAACCTTGCTCTTTCCGCTCTGTGTTTCTCTTCACTGGTTTCGCGTTCCTTCTTCATCGTATTTCAGCTGCGGATTTCACTGACTTGGTTTACAAGGGCTGTACGGATCAGAAATTTCAAGACCCATCGGGGATTTACTCGCAGAACCTCAGGTCTTTACTGGGTACTCTCGTCGCACAATCTGCACAAAAGGTTTTCGCCTCTACAACTTCCGGCGACGGCCAGAATGCGATAATGGGTCTGTACCAATGCAGAGGAGACCTCTCAAATTCCGACTGCTACAAATGTGTGAGCAAGATTCCCAATATGCTCGACAAGCTTTGTGGCCAGGTTGTGGCGGCGCGTGTCCAGCTCAATGGGTGCTATTTGCGGTACGAGATCGTCGGGTTCAAGCAAGTCTCTGGGACTCAGCTGCTGTACAAGGTCTGTGGGTCGATTCAGGCGAGCGGAAGTGGGTTTGCAGAGAGAAGAGAGACAGCGTTTGGGATGGTGGAAAATGGAGTGAAAAGTGGAGGAAGCTTGTTTTACACTGGGAGCTACCAGTCTCTGTATGTGTTAGGGCAGTGCGAAGGCGATTTGTCTAGTGGTGATTGTGGCGATTGTTTGAAGAGTGCTGAAGATCAGGCTAAATCTCTGTGTGGTTATTCAATTTCTGCGAAAGTTTATCTTCAGAAGTGCTATATCAGCTATAACTTTTATCCTAATGGAGTGCCTGGGAATGGCGAGTCAGCATCTTCGTCCTCAGGAACTGGGCCTCACAACACACAGAAGACAGTAGCTCTTGCAGTAGGAGGGGTTGCAGCTCTGGGATTCTTGATCGCTTGTTTGTTATTTGTGAAATCAGCGTTCAAGAAACGAGGTGGTTCAACTTGTGGAATCTATGAAGGAAGTGCTTTGTGGGGACACAAGATCGTTGAGTGA 936 0.4818 MGVIGKPCSFRSVFLFTGFAFLLHRISAADFTDLVYKGCTDQKFQDPSGIYSQNLRSLLGTLVAQSAQKVFASTTSGDGQNAIMGLYQCRGDLSNSDCYKCVSKIPNMLDKLCGQVVAARVQLNGCYLRYEIVGFKQVSGTQLLYKVCGSIQASGSGFAERRETAFGMVENGVKSGGSLFYTGSYQSLYVLGQCEGDLSSGDCGDCLKSAEDQAKSLCGYSISAKVYLQKCYISYNFYPNGVPGNGESASSSSGTGPHNTQKTVALAVGGVAALGFLIACLLFVKSAFKKRGGSTCGIYEGSALWGHKIVE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1340 311 Pfam Salt stress response/antifungal 180 237 IPR002902 -
Lele05g1340 311 Pfam Salt stress response/antifungal 39 131 IPR002902 -
Lele05g1340 311 FunFam cysteine-rich repeat secretory protein 3 141 239 - -
Lele05g1340 311 FunFam cysteine-rich repeat secretory protein 3 31 135 - -
Lele05g1340 311 ProSiteProfiles Gnk2-homologous domain profile. 140 240 IPR002902 -
Lele05g1340 311 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Lele05g1340 311 Gene3D - 31 135 IPR038408 -
Lele05g1340 311 Gene3D - 141 239 IPR038408 -
Lele05g1340 311 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 10 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1340 Lele-ChrLele05 8411642 8413288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1340 8 239 Receptor kinase-like Gene Family AT4G05200 27.236 4.85e-17 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1340 05 8411642 8413288 Lele05g1340 05 8411642 8413288 ECH
Lele05g1340 05 8411642 8413288 Lele07g1395 07 8481847 8487115 hybridization
Lele05g1340 05 8411642 8413288 Lele08g1196 08 7549679 7551296 hybridization