Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1117 ATGAGAGGGATGGGTTTTATACGAAAAATGAACCAACCTCGCAATGCACCGCAAATGGGAAGGCGCGCTGCTCTTGTTCTACTTCCAAAGTTGCATGGATCACTCAGGAAAGAGCTCTGCAATTCCATACGTGTTCCTCTGTCCCTTTGCTTCTGCTCCGAACCTGTTTCAGAGACACTTGCTGAAACCCACCGTACTCAAATTAATCAGCTTACAGTAGAATTTAACAAGCAATCCTATTCACAAGAAGAGGAACGGCTTGAAAAAGTTCGCAAGTTTCGAAATTTACTTGAAGAGGGTCGCGGACATGATGTCCAAAGGTTCATCAAATCCCTGGTTCTCTCTAAAAACCCATTTTCTTCTCCCTTTGACCTACACGCCTACTTCTCCCTTTCAGCACTCTCCTTGAAACCTGTCTTCTCAAATTTGCTTTTCCGGGCTTGCTCCGAGTCCGAGATGGTCAATGAAGCTATGGAGTTGTACTATTTGATGAGGAAAGATGGCATGCTTCCGTCGACAGGTTCTGTGAATCGGTTGCTCGAAACTTTGATTATTTTGAAACAGTATAAGAAAATTCTTGATCTATTTCCGGATTTTGTGGAGGCTGGCATTCAACCCAACACTTTCTCATACAGCAAAGCTGTTCAGGCGGCAGTGATGCTGAAGGACTTACAAAGGGCTCTGGAATTGATCAATGACATGGAAGAGGGAGGAGTGAACCCATCTTCGTTTACTTATAACCTGGTAATAGGTGGGTTTTGTAAAGAGCGGAGAATCACGGATGCTCACAACCTGTTTGATGAAATGATTCAAAGGAAGCTAGTTCCGAATTTGGTTACTTATAATACGCTGATTGATGGATACTGCAAGGTGGGAGAAATAGAGAGAGCTTTGGCTTTGAGGGAGAGGATGAGGGTGGAAAATGTGAAGCCTAATCTTGTCACTCACAATTCTTTGTTGAGGGGTTTTTGTGATTCACAGAGGATGGCAGAAGCGAGGACGTTGTTGCAAGAGATGGAGGCTAACAAGTTTTTGCCGGTTGGATTCACTGGTATTATATTTGATGATGTCTCGAGTGGAAATATTAATATTTCGTTGGACAAAGAGGGGATGATCGACCATTATACTTGTAGTATTTTGCTGGATGGATTATGCAGAGCGGGTATGGTTGAAAAGGCCAAGGAGGTTTTGGCCAAACTAACAGAGAGTAGATTTATACCAAGTAAGATAGCATACAATGTATTAGTGAATGCATATTGCCAAGAGGGTGACATAGAGAAAGCCATACTGACAATTGAACAAATGGAAGAACGTGGGTTGGAGGCTAGCTATTTGACTTTCAATACCCTCATTAACAAGTTCTTCAAAATGAAGGAGGTGGACCAGGCAGAGAGATGGTTGAAAAAGATGGCAGAGAAGGGTGTTTCCCCCAGTTTGGAGACTTATAACATTCTCATTAATGGTTACGGCTGCATTAGTCAATTTGACAAATGTTTTCAGATTCTCGAGGAAATGGAAAGGGCAGGGATAGAGCCCAGTGTCTCAAGCTATGGTCTTCTGGTGAATTGCTTGTGCAAAGGAGGCAAGCTTCTTGAAGCTGAACTGATCCTTGTGGATATGGCAAACCGAGGGGTTTCTCCAAACGCAGAAATATTTAATATGCTCATTGAAGGTAGCTGCTCGATGGGCAAAATTACTGATGCCTTGAGATTTTTTGAGGAAATGTTTGAAAATGGACCAGGTCCAACTCTAGTAACATACAACACGCTCATATATCGGCTCGGAAAAGATGGGAGGATAACAGAAGCTGAGAAGTTTTTCCAGCAGATGGGTCGCAATGGATACAATCCAGATGTAATCTCATACAACTCCTTGATCTCAGGGTATGCTAGGTCAGGAAACACCCAGAAATGCCTTGAATTGTATGATAATATGAAGAAAGTGGGCATTAAACCTACAGTTAGGACGTTTCATCCTCTGATCAATGCAAGCATCAAGGAAGGGGTTGTGACAGCAGAGAGGCTATTTCAGGAAATGTCAGAAATGGGTGTGTTTCCAAATCTAGTTGTATATAATGCAATGATTTACGCTTACGCCGAAAGAGGGGATGTTGAGAAGGCAATGACTTTGCACCAACGGATGGTAGAGCAGGGGATTAATTCGGACAAGGTAACTTATAACAGCTTAATTTTGGTATGCTTTAGAGATAAAAGGGCGTTGGAAGTAAAGCATCTTGTTCATGACATGAAGGCTAAAGGAGTGGTTCCAAAAGCTGATACATATAACATACTGGTGAAGGGATATTGTGATTTGAAGGATTTCAAAGAGGCGTACTTTTGGTATAAAGAAATGTCTGACAAAGGTTTTTCCCTAAACGAACGCATCCCTTGTCAACTTATCTCGGGACTCAGTTACGAGGGTATGCTACAAGAAGCTCAAATTGTTTCCTCAGACTTGAGTTGTAGGGCATAA 2472 0.4231 MRGMGFIRKMNQPRNAPQMGRRAALVLLPKLHGSLRKELCNSIRVPLSLCFCSEPVSETLAETHRTQINQLTVEFNKQSYSQEEERLEKVRKFRNLLEEGRGHDVQRFIKSLVLSKNPFSSPFDLHAYFSLSALSLKPVFSNLLFRACSESEMVNEAMELYYLMRKDGMLPSTGSVNRLLETLIILKQYKKILDLFPDFVEAGIQPNTFSYSKAVQAAVMLKDLQRALELINDMEEGGVNPSSFTYNLVIGGFCKERRITDAHNLFDEMIQRKLVPNLVTYNTLIDGYCKVGEIERALALRERMRVENVKPNLVTHNSLLRGFCDSQRMAEARTLLQEMEANKFLPVGFTGIIFDDVSSGNINISLDKEGMIDHYTCSILLDGLCRAGMVEKAKEVLAKLTESRFIPSKIAYNVLVNAYCQEGDIEKAILTIEQMEERGLEASYLTFNTLINKFFKMKEVDQAERWLKKMAEKGVSPSLETYNILINGYGCISQFDKCFQILEEMERAGIEPSVSSYGLLVNCLCKGGKLLEAELILVDMANRGVSPNAEIFNMLIEGSCSMGKITDALRFFEEMFENGPGPTLVTYNTLIYRLGKDGRITEAEKFFQQMGRNGYNPDVISYNSLISGYARSGNTQKCLELYDNMKKVGIKPTVRTFHPLINASIKEGVVTAERLFQEMSEMGVFPNLVVYNAMIYAYAERGDVEKAMTLHQRMVEQGINSDKVTYNSLILVCFRDKRALEVKHLVHDMKAKGVVPKADTYNILVKGYCDLKDFKEAYFWYKEMSDKGFSLNERIPCQLISGLSYEGMLQEAQIVSSDLSCRA 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Lele05g1117 823 Gene3D Tetratricopeptide repeat domain 471 543 IPR011990 GO:0005515
Lele05g1117 823 Gene3D Tetratricopeptide repeat domain 560 669 IPR011990 GO:0005515
Lele05g1117 823 Gene3D Tetratricopeptide repeat domain 130 218 IPR011990 GO:0005515
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 757 791 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Lele05g1117 823 Pfam PPR repeat family 446 489 IPR002885 -
Lele05g1117 823 Pfam PPR repeat family 241 290 IPR002885 -
Lele05g1117 823 Pfam PPR repeat family 686 731 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 722 756 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lele05g1117 823 SUPERFAMILY TPR-like 410 784 IPR011990 GO:0005515
Lele05g1117 823 Pfam Pentatricopeptide repeat domain 536 595 IPR002885 -
Lele05g1117 823 Pfam Pentatricopeptide repeat domain 607 663 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 721 IPR002885 -
Lele05g1117 823 SUPERFAMILY HCP-like 379 520 - -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 516 549 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 760 793 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 620 654 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 411 441 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 551 579 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 481 514 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 446 478 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 724 756 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 279 312 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 142 172 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 314 346 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 585 619 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 689 720 IPR002885 -
Lele05g1117 823 TIGRFAM PPR: pentatricopeptide repeat domain 244 277 IPR002885 -
Lele05g1117 823 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 407 635 - -
Lele05g1117 823 Gene3D Tetratricopeptide repeat domain 670 821 IPR011990 GO:0005515
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Lele05g1117 823 Pfam PPR repeat 142 168 IPR002885 -
Lele05g1117 823 Pfam PPR repeat 760 789 IPR002885 -
Lele05g1117 823 Pfam PPR repeat 411 440 IPR002885 -
Lele05g1117 823 Gene3D Tetratricopeptide repeat domain 365 470 IPR011990 GO:0005515
Lele05g1117 823 Gene3D Tetratricopeptide repeat domain 219 358 IPR011990 GO:0005515
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Lele05g1117 823 Pfam PPR repeat 308 340 IPR002885 -
Lele05g1117 823 Pfam PPR repeat 373 397 IPR002885 -
Lele05g1117 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1117 Lele-ChrLele05 6972747 6975218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1117 534 823 Glycosyltransferase AT1G05670 21.649 4.44e-13 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1117 05 6972747 6975218 Lele07g1159 07 7003788 7006205 hybridization
Lele05g1117 05 6972747 6975218 Lele08g0969 08 6144507 6147956 hybridization