Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0969 ATGAACCCACCTCTTAGTGCACCGCAAATGGGAAGGCGCGCTGCTCTTGTTCTCCTCCCAAAGTTGCCTGGATCACTCAGGAAGGAGCTCTGCAATTTCATACATGTTCCTCTTTCACTTTGCTTCTGCTCTGAACCTGTTTCAGAGACACTTGCTGAAACCCACCGTACCCAAATTAATGAGCTTTCTGTAGAATTTAACAATCAATCCGATTCCCAAGAACAGGAACGGCTTAAACAAGCTCGCAAGTTTCAAAATTTACTTGAAGAGGGTCGCGGACATGCTGTCCAAAGGTTCTGTAAACCGGTTGCTCGAAACTTTGACTATTTTGAACAGTATAAGAAAATTCTTTATCTATTCCCGGATTTTGTGGAGTCTGGCATTCAACCCTACACTTTCTCATACAGCAAAGCTGTTCAGGCGGCAGTGATGCTGAAGCACTTAAAAAGGGCTCTCGAATTGATCAATGACATGGAGGAGGGAGGAGTGAGCCCATGTTCGTTTATTTATAACCTGGTAATCGGTGGGTTGTGTAAAGAGCGGAGAATCACAGATGCTCACAACCTGTTTGATGAAATGATCCAAAGGAAGCTAGTTCCTAATTTGGTTACTTATAATACGCTGATTGATAGATACTGCAAGTTGGGAGAGATAGAGAGAGCTTTGTCTTTGAGGGAGAGGATGAGGGTGGAAAATGTGAAGCCCAATCTTGTCACGTACAATTCTTTGTTGAGGGGTCTTTGTGATTCACAGAAGAGGATGGCAGAAACTAGGACGTTGTTGCAAGAGATGGAGGCTAACAAAGCGAGCATGGTTGAAAAGGCCAAGGAGGTTTTGGCCAAACTAACAGAGAGTGGATTTATACAAAGTAAGATTCTCGAGGAAATGGAAAAGGCAGGGATAGAGCCCAGTGTCTTAAGCTATGGTCTTCTGGTTAATTGCTTGTGCAAAGGAGGCAAGCTTCTTGAAGCTGAACTGATCCTTGTGGAAATGGCAAGCCGAGGGGTTTCTCCAAACGCAGAAATATATAACATGCTCATTGAAGGTAGCTGCTCGATGGGCAAAATGACAGACGCCTTGAGATTTTTTGAGGAAATGGTTAAAAATGGACCAGGAAACACCCACAAATGCGTTGAACTGTATGATAATATGAAGAAAGTGGGCATAAAAGCTACAGTTAGGACGTTTCATCCGTTGTTCAATGCAAGCATCAAGGAAGGGGTTCTGACAGTAGGGAGGCTGTTTGAGGAAATGTTAGAAATGGGTTTGGTTCCGGATCGAGTTGTATATAAAGCAATGATTTACGCTTATGCCGAAGAAGGGGATGTTGAGAAGGCCATGACTTTGCACCAACGGTTGGTTGAGCAGGGGATTAATTCAGACAAGGTAACTTATAACAGCTTGATTTTGATATGTCTTAGAGATAAAAGGGTGTTGGAAGTGAAGCATCTTGTTCATGACATGAAGGCTAAAGGAGTGGGTCCAAATGCTGATACATGTAACATACTGGTGAAGGGATATTGCGATTTGAAGGATTTCAAGGAGGCGTACTTTTGGTATAAAGAAATGTCTGACAAAGGTTTTTCCCTAAGTGTCACGGTTTTGCCCTTAAGTGATAAAGAAGAGTTCTCTTTGTCAAATAATGAATTGCGGAAATTGCGTTTTCCAAAAGCAGCCACCAATACAATGAGAAGAAGTAAAAACGCATTTCGAAAGGAAGACAATGAATGTGTTCATTTCATGTTCTGA 1749 0.4242 MNPPLSAPQMGRRAALVLLPKLPGSLRKELCNFIHVPLSLCFCSEPVSETLAETHRTQINELSVEFNNQSDSQEQERLKQARKFQNLLEEGRGHAVQRFCKPVARNFDYFEQYKKILYLFPDFVESGIQPYTFSYSKAVQAAVMLKHLKRALELINDMEEGGVSPCSFIYNLVIGGLCKERRITDAHNLFDEMIQRKLVPNLVTYNTLIDRYCKLGEIERALSLRERMRVENVKPNLVTYNSLLRGLCDSQKRMAETRTLLQEMEANKASMVEKAKEVLAKLTESGFIQSKILEEMEKAGIEPSVLSYGLLVNCLCKGGKLLEAELILVEMASRGVSPNAEIYNMLIEGSCSMGKMTDALRFFEEMVKNGPGNTHKCVELYDNMKKVGIKATVRTFHPLFNASIKEGVLTVGRLFEEMLEMGLVPDRVVYKAMIYAYAEEGDVEKAMTLHQRLVEQGINSDKVTYNSLILICLRDKRVLEVKHLVHDMKAKGVGPNADTCNILVKGYCDLKDFKEAYFWYKEMSDKGFSLSVTVLPLSDKEEFSLSNNELRKLRFPKAATNTMRRSKNAFRKEDNECVHFMF 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0969 582 Gene3D Tetratricopeptide repeat domain 291 371 IPR011990 GO:0005515
Lele08g0969 582 Coils Coil 254 281 - -
Lele08g0969 582 Pfam PPR repeat family 200 249 IPR002885 -
Lele08g0969 582 Pfam PPR repeat family 461 509 IPR002885 -
Lele08g0969 582 Pfam PPR repeat 428 458 IPR002885 -
Lele08g0969 582 Gene3D Tetratricopeptide repeat domain 110 290 IPR011990 GO:0005515
Lele08g0969 582 Gene3D Tetratricopeptide repeat domain 372 573 IPR011990 GO:0005515
Lele08g0969 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Lele08g0969 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Lele08g0969 582 TIGRFAM PPR: pentatricopeptide repeat domain 342 370 IPR002885 -
Lele08g0969 582 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Lele08g0969 582 TIGRFAM PPR: pentatricopeptide repeat domain 169 201 IPR002885 -
Lele08g0969 582 TIGRFAM PPR: pentatricopeptide repeat domain 499 531 IPR002885 -
Lele08g0969 582 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Lele08g0969 582 TIGRFAM PPR: pentatricopeptide repeat domain 463 497 IPR002885 -
Lele08g0969 582 TIGRFAM PPR: pentatricopeptide repeat domain 428 459 IPR002885 -
Lele08g0969 582 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 291 370 - -
Lele08g0969 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 271 IPR002885 -
Lele08g0969 582 Pfam PPR repeat 300 331 IPR002885 -
Lele08g0969 582 Pfam PPR repeat 334 367 IPR002885 -
Lele08g0969 582 Pfam PPR repeat 162 193 IPR002885 -
Lele08g0969 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Lele08g0969 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Lele08g0969 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Lele08g0969 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Lele08g0969 582 SUPERFAMILY HCP-like 429 531 - -
Lele08g0969 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0969 Lele-ChrLele08 6144507 6147956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0969 127 573 Glycosyltransferase AT1G05670 29.694 2.42e-57 203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1117 05 6972747 6975218 Lele08g0969 08 6144507 6147956 hybridization