Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1004 ATGGATCCGGCGAAGACGCCGCTTGGCCAGACGTTACTGGACGAGATCACTCCAGTTGTGATGGTACTTTCAACTCCTTCTGTCGAAGAGGCTTGCCTCAAGAATGGCCTCAGCCTCCTTCAGATGCTGTCACCATTCAGCTCTTTTGACAACATCGACGTGCCAGTAAGGACTGCCAGTGACCAGCCCTATAGGATTCAGAAGTTCAAATTGCGATTATATTATGCCTCGGATGTTAGGAAGCCAGATTTGGAGGTAGCTAAAGAGCATTTAAAGCAAGTTATCACAGAGGCAGGGGAGAAAGAGTTCAGTGAGCTGAGTTTGGATACTCCAGAAATTAATCATGTACTGGAGAGTTCTCAATCCGGAAATGCACCATCCTGGCTTCAGTTTTTTAACAAAGAACTTATCCGTGTGGTCTCCTTTTCAGACCACGAAGCTTTTGATCATCCAGTGGCATGTCTTTTGGCTGTTTCTTCTAAGGATGAACAACCAATTAACAGATTTATTGACCTGTTTAACACCAACAAGCTGCCTTCCCTTCTTAATGATGGCGTGATGGATCCAAAGATTTTGAAGCATTATTTATTAGTGCATGATAATCAAGATGGCCCTGCTGACAGGGCAACTAAAATATTGACAGAGATGAGGAGTACATTTGGTACTAGTGACTGTTCGTTGCTATTTATCAATTCTTCAACTGATGCTGCGGTCAAACACGAAGAGAACCCTTGGGCTTCATATAAGTCTGATGTCTCTCCTGGTCAAGATCTTGGTTTCTTTCTTGACACTGATGATATCAATATGATTAAAGACTTAATGCAAGATTTATCATCCAAGCACGTCATTCCCAGCATGGAGCAAAAGATTCGTGTGCTCAACCAACAAGTTTCTGCAACACGGAAAGGCTTTAGAAACCAAATTAAAAATTTATGGTGGAGAAAAGGGAAAGAGGATGGCACGGATTCTGTCAATGGTCCTATGTATTCCTTTAGCTCCATCGAATCCCAAATTCGAGTTTTGGGTGATTATGCTTTCATGTTAAGCGATTATGAACTTGCCTTGTCAAATTATCGCTTAATTTCCACGGATTACAAACTTGATAAAGCTTGGAAGCGCTATGCTGGTGTGCAGGAAATGATGGGACTTACGTACTTCATGTTGGACCAATCCAGAAAGGAAGCTGAATATTGCATGGAAAATGCTTTTAACACTTATTTAGTATATTGTTATGTCCAGAAACTTGGTTCATCTGGGCAGCAAAATGCCACACGATGTGGTCTCTGGTGGATAGAAATGTTGAATGCACGAGATCTATATAAGGAGGCAGCTCCAATTTATTTCCGCATTTGTGGTGAGGATATCCTACATTCTGCTGTGATGCTTGAACAGGCATCCTACTGCTACTTGCTGTCCAAACCTTCAATGTTACGTAAATTTGGATTTCATCTTGTGCTTTCTGGGGATCGTTATAACAAGTGTGATCAGATCAAACATGCAATCCGAACATACAGAAGTGCTCTCTCTGTTTTTAAGGGAAGTACATGGAGTTATATCAAAGATCGTGTTCATTTCCATATAGGACAGTGGTATGCTTCTCTTGGGATGTGTGATGTGGCTGTCAAGCATATGTTGGAAATTTTGGCTTGTGGTCACCAGTCCAAGGCAACACAGGAGCTATTCTTGGGCGACTTTCTTCAAATAGTTCAGAAAACAGGACAAACGTTTGACGTATCCAGACTTCAGTTGCCTGTAATCAACATTTCTTCACTCAAGGTTGTCTTTGAAGACCACCGAACTTTTGGATCACCTTCGGCCGCTAACACTAGAGAAAGCTTGTGGCGTTCCTTGGAGGAAGAAATAATACCATCGCTCTCTACTACGAAGAGCAATTGGTTGGAGTTGCAATCAAAGCTTGTCTCAAAAAAATACAGAGAATCAAATGTTTGTGTTGCTGGAGAAGCCGTGATGGTGAATGTCGAATTCAAAAACCCTCTTCAAATACCAATTCCTGTGTCTGGAGTTACCCTTGTATGCAAGCATTTTCCTGATGAAAATATTTCAAGGATGGAAAATGATAATGCAGGAAAACATGAAGAGGTGACGGCCTGCAGGGACATGAGCTCTGAGAATTCTTTTTTGGTGTCAGAGGTTGACTTCTTATTAAGGGGTGGTGAAACAACCATGGTGCAACTATCAGTTACTCCAAGAGAAGAAGGTATTCTGGAAGTTCTTGGTGTTAGGTGGAAATTGTTGGGTTCTATAGTCGGCTTTCATGACTTTGACTTTAATCATGTAAAGAAGAACGTTTTAAAAGGAAAGAGGAAAGGGAAACTCTCAGCTAATGAAAACTTTAAGTTTTTAGTGATTAAGAGCATACCCAAGCTTCAAGGGTCCATTCACCCTTTCCCTGACAAGGCTTATGTGGGAGATTTACGGCACCTTGTTTTGGAGTTGAGAAACCCATCAGAGTTTCCTGTTGAGGTAGCTGTTTGA 2496 0.4163 MDPAKTPLGQTLLDEITPVVMVLSTPSVEEACLKNGLSLLQMLSPFSSFDNIDVPVRTASDQPYRIQKFKLRLYYASDVRKPDLEVAKEHLKQVITEAGEKEFSELSLDTPEINHVLESSQSGNAPSWLQFFNKELIRVVSFSDHEAFDHPVACLLAVSSKDEQPINRFIDLFNTNKLPSLLNDGVMDPKILKHYLLVHDNQDGPADRATKILTEMRSTFGTSDCSLLFINSSTDAAVKHEENPWASYKSDVSPGQDLGFFLDTDDINMIKDLMQDLSSKHVIPSMEQKIRVLNQQVSATRKGFRNQIKNLWWRKGKEDGTDSVNGPMYSFSSIESQIRVLGDYAFMLSDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFNTYLVYCYVQKLGSSGQQNATRCGLWWIEMLNARDLYKEAAPIYFRICGEDILHSAVMLEQASYCYLLSKPSMLRKFGFHLVLSGDRYNKCDQIKHAIRTYRSALSVFKGSTWSYIKDRVHFHIGQWYASLGMCDVAVKHMLEILACGHQSKATQELFLGDFLQIVQKTGQTFDVSRLQLPVINISSLKVVFEDHRTFGSPSAANTRESLWRSLEEEIIPSLSTTKSNWLELQSKLVSKKYRESNVCVAGEAVMVNVEFKNPLQIPIPVSGVTLVCKHFPDENISRMENDNAGKHEEVTACRDMSSENSFLVSEVDFLLRGGETTMVQLSVTPREEGILEVLGVRWKLLGSIVGFHDFDFNHVKKNVLKGKRKGKLSANENFKFLVIKSIPKLQGSIHPFPDKAYVGDLRHLVLELRNPSEFPVEVAV 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1004 831 SUPERFAMILY TPR-like 435 554 IPR011990 GO:0005515
Lele05g1004 831 PANTHER TRANSPORT PROTEIN TRAPP 3 828 IPR024420 -
Lele05g1004 831 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 187 523 IPR024420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1004 Lele-ChrLele05 6195583 6204081 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1004 05 6195583 6204081 Lele05g1004 05 6195583 6204081 ECH
Lele05g1004 05 6195583 6204081 Lele07g1040 07 6255691 6273401 hybridization
Lele05g1004 05 6195583 6204081 Lele08g0852 08 5357556 5369998 hybridization