Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0820 ATGGCTACGAGAACGAAGGTCGCGAGAGTTCTGACTGCTCTCTCTACTCGAACGCCAAATTCGATATCAGGGTCTGGCTGCTTCAACGCGCTTCAAAAGTTCTCTTCCTCTTATGCTTCCGTCGCTCTGGCCACCGAGGAATCAGAGACGATTGGTTCGCGATGCATGGGGTGGGAGACGTTGGGAGCGAAGGATTATGAGGATTACAGGAAGTCCAGGTACGGTGACATCACTCACAAGGCTGTGCTTGTTGATGCCGTTGGCACTCTTGTTGTGCCCTCTCAACCCATGGCCGAGATATATAGAAAGATCGGGGAGAAATATGGGGTAGAATACTCGGAGGATGAGATTTTACATCGATACAGAAGAGCTTATGGGCAGCCTTGGGGCAGATCTCGGCTGAGATATGTTAATGACGGCAGGCCCTTCTGGCAATACATAGTCAGTTATTCGACTGGCTGTTCTGATTCTCAGTACTTCGAAGAACTTTATAACTACTACATGACAGATAAGGCATGGCACCTCTGTGATCCTGAGGCTGAAAAAGTGTTCAAAGCAATTAGGAAAGCTGGTGTAAAGCTGGCTGTTGTGTCAAATTTTGACACTAGATTAAGACCTCTACTGAAGGCATTGAACTGTGATAACTGGTTTGATGCTGTAGCAGTATCGGCTGAGGTCGAGGCAGAGAAGCCAAATCCAACCATATTTCTTAAAGCATGTGAGCTGTTGGGTTTAATACCTGAGGATGCTGTTCATGTTGGGGATGATCGTAGAAATGATATATGGGGTGCTAGAGATGCAGGCTGTGATGCCTGGCTTTGGGGAAGTGATGTTCATTCCTTTAGGGAGGTGGCTCAGAGAATTGGGGTCCAAGTTTGA 879 0.4744 MATRTKVARVLTALSTRTPNSISGSGCFNALQKFSSSYASVALATEESETIGSRCMGWETLGAKDYEDYRKSRYGDITHKAVLVDAVGTLVVPSQPMAEIYRKIGEKYGVEYSEDEILHRYRRAYGQPWGRSRLRYVNDGRPFWQYIVSYSTGCSDSQYFEELYNYYMTDKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPLLKALNCDNWFDAVAVSAEVEAEKPNPTIFLKACELLGLIPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFREVAQRIGVQV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0820 292 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 188 268 IPR006439 -
Lele05g0820 292 CDD HAD_dREG-2_like 180 291 - -
Lele05g0820 292 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 217 233 IPR006439 -
Lele05g0820 292 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 79 90 IPR006439 -
Lele05g0820 292 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 187 200 IPR006439 -
Lele05g0820 292 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 235 255 IPR006439 -
Lele05g0820 292 SFLD Haloacid Dehalogenase 80 274 - -
Lele05g0820 292 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 80 274 - -
Lele05g0820 292 Pfam Haloacid dehalogenase-like hydrolase 88 271 IPR041492 -
Lele05g0820 292 Gene3D - 82 275 IPR023214 -
Lele05g0820 292 SUPERFAMILY HAD-like 80 282 IPR036412 -
Lele05g0820 292 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 80 273 IPR011949 -
Lele05g0820 292 Gene3D - 95 168 IPR044924 -
Lele05g0820 292 PANTHER - 32 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0820 Lele-ChrLele05 4911958 4914848 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0820 05 4911958 4914848 Lele05g0820 05 4911958 4914848 ECH
Lele05g0820 05 4911958 4914848 Lele07g0857 07 4977320 4980243 hybridization
Lele05g0820 05 4911958 4914848 Lele08g0665 08 4058822 4062336 hybridization