Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0665 ATGGCTTTAATGGCTACGAGAACGAAGGTCGCGAGAGTTCTCACTGCTCTTTCTATTCGCGCGCCAAATTCGAGATCAGGGTCTGGCTGCTTCAACCCATTTGGCGCGCTCCAAAAGTTCTCTTCCCCTTATGCTTCCGTCGCTCTGACTACCGAGGAATCAGAAACGACTGGTTCGCGATGCATGGGGTTGGAGGCATTGGAAGTGAAGGATTATGAGGATTACAGGAAGTCCCGGTACGGTGACATCACTCACAAGGCTGTTCTTGTTGATGCCGTTGGCACTCTTGTTGTCCCCTCTCAACCCATGGCCGAGATATATAGAAAGATTGGGGAGAAGTATGGGGTAGAATACTCGGAGGATGAGATTTTACACCGATACAGAAGAGCTTATGGGCAGCCTTGGGGCAGATCTCGGCTCAGATATGTTAATGACGGCAGGCCCTTCTGGCAATACATAGTCAGTTATTCCACTGGCTGTTCTGATTCTCAGTACTTTGAAGAACTTTATAACTACTACATGACAGATAAGGCATGGCACCTCTGTGATCCTGAGGCTGAAAAAGTGTTCAAAGCAATTAGGAAAGCTGGTGTGAAGTTGGCTGTTGTGTCAAATTTTGACACTAGATTAAGACCTCTACTGAAGGCATTGAACTGTGATAACTGGTTTGATGCAGTAGCAGTATCAGCTGAGGTTAAGGCAGAGAAGCCAAATCCAACCATATTTCTTAGAGCATGTGAGCTGTTGGGAGTAAAACCTGAGGATGCTGTTCATGTTGGGGATGATCGTAGAAATGATATATGGGGTGCTAGAGATGCAGGCTGTGATGCCTGGCTTTGGGGAAGTGACGTTCATTCCTTTAGGGAGGTAGCACAGAGAATTGGGGTCCAAGTTTGA 897 0.4705 MALMATRTKVARVLTALSIRAPNSRSGSGCFNPFGALQKFSSPYASVALTTEESETTGSRCMGLEALEVKDYEDYRKSRYGDITHKAVLVDAVGTLVVPSQPMAEIYRKIGEKYGVEYSEDEILHRYRRAYGQPWGRSRLRYVNDGRPFWQYIVSYSTGCSDSQYFEELYNYYMTDKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPLLKALNCDNWFDAVAVSAEVKAEKPNPTIFLRACELLGVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFREVAQRIGVQV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0665 298 CDD HAD_dREG-2_like 186 297 - -
Lele08g0665 298 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 194 274 IPR006439 -
Lele08g0665 298 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 241 261 IPR006439 -
Lele08g0665 298 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 223 239 IPR006439 -
Lele08g0665 298 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 193 206 IPR006439 -
Lele08g0665 298 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 85 96 IPR006439 -
Lele08g0665 298 SUPERFAMILY HAD-like 86 288 IPR036412 -
Lele08g0665 298 Gene3D - 88 281 IPR023214 -
Lele08g0665 298 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 86 280 - -
Lele08g0665 298 PANTHER - 55 297 - -
Lele08g0665 298 Gene3D - 101 174 IPR044924 -
Lele08g0665 298 SFLD Haloacid Dehalogenase 86 280 - -
Lele08g0665 298 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 86 279 IPR011949 -
Lele08g0665 298 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 175 276 IPR006439 -
Lele08g0665 298 Pfam Haloacid dehalogenase-like hydrolase 94 277 IPR041492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0665 Lele-ChrLele08 4058822 4062336 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0665 08 4058822 4062336 Lele08g0665 08 4058822 4062336 ECH
Lele05g0820 05 4911958 4914848 Lele08g0665 08 4058822 4062336 hybridization
Lele06g0670 06 4015377 4019203 Lele08g0665 08 4058822 4062336 hybridization