Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0857 ATGGCTACGAGAACGAAGGTCGCGAGATTTCTCACTGCTCTCTCTTCTCGAACGCCAAATTCGAGATCAGGGTCTGGCTGCTTCAATCCATTTGGCGCGCTCCAAAAGTTCTCTTCCTCTTATGCTTCTGTCGCTCTGGCCACCGAGGTATCAGAGACGATCGGTTCGCGATGCATGGGGTTGGAGACGTTGGGAGCGAAGGATTATGAGGATTACAGGAAGTCCCGGTACGGTGACATCACTCACAAGGCTGTGCTTGTTGATGCCGTTGGCACTCTTGTTGTGCCCTCTCAACCCATGGCCGAGATATATAGAAAGATTGGGGAGAAGTATGGGGTAGAATACTCGGAGGATGAGATTTTACACCGATACAGAAGAGCTTATGGGCAGCCTTGGGGCAGATCTCGGCTGAGATATGTTAATGACGGCAGGCCCTTCTGGCAATACATAGTTAGTTATTCGACTGGCTGTTCTGATTCTCAGTACTTTGAAGAACTTTATAACTACTACATGACAGATAAGGCATGGCACCTCTGTGATCCTGAGGCTGAAAAAGTGTTCAAAGCAATTAGGAAAGCTGGTGTAAAGCTGGCTGTTGTGTCAAATTTTGACACTAGATTAAGACCTCTACTGAAGGCATTGAACTGTGATAACTGGTTTGATGCTGTAGCAGTATCGGCTGAGGTCGAGGCAGAGAAGCCAAATCCAACCATATTTCTTAAAGCATGTGAGCTGTTGGGTGTAAAACCTGAGGATGCTGTTCATGTTGGGGATGATCGTAGAAATGATATATGGGGTGCTAGAGATGCAGGCTGTGATGCCTGGCTTTGGGGAAGTGATGTTCATTCCTTTAGGGAGGTAGCTCAGAGAATTGGGGTCCAAGTTTGA 888 0.4741 MATRTKVARFLTALSSRTPNSRSGSGCFNPFGALQKFSSSYASVALATEVSETIGSRCMGLETLGAKDYEDYRKSRYGDITHKAVLVDAVGTLVVPSQPMAEIYRKIGEKYGVEYSEDEILHRYRRAYGQPWGRSRLRYVNDGRPFWQYIVSYSTGCSDSQYFEELYNYYMTDKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPLLKALNCDNWFDAVAVSAEVEAEKPNPTIFLKACELLGVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFREVAQRIGVQV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0857 295 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 172 273 IPR006439 -
Lele07g0857 295 Gene3D - 85 278 IPR023214 -
Lele07g0857 295 Gene3D - 98 171 IPR044924 -
Lele07g0857 295 PANTHER - 47 294 - -
Lele07g0857 295 CDD HAD_dREG-2_like 183 294 - -
Lele07g0857 295 SFLD Haloacid Dehalogenase 83 277 - -
Lele07g0857 295 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 83 277 - -
Lele07g0857 295 SUPERFAMILY HAD-like 83 285 IPR036412 -
Lele07g0857 295 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 191 271 IPR006439 -
Lele07g0857 295 Pfam Haloacid dehalogenase-like hydrolase 91 274 IPR041492 -
Lele07g0857 295 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 83 276 IPR011949 -
Lele07g0857 295 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 190 203 IPR006439 -
Lele07g0857 295 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 238 258 IPR006439 -
Lele07g0857 295 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 82 93 IPR006439 -
Lele07g0857 295 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 220 236 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0857 Lele-ChrLele07 4977320 4980243 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0857 07 4977320 4980243 Lele07g0857 07 4977320 4980243 ECH
Lele05g0820 05 4911958 4914848 Lele07g0857 07 4977320 4980243 hybridization
Lele06g0670 06 4015377 4019203 Lele07g0857 07 4977320 4980243 hybridization