Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0775 ATGGCCAAAGGCGTAGTCTCAGACGACGAAGAGGAGGTCGAACTCGAAGAGGAGGAGAGGGAGCAAGTTGATGGAGAGGGTATGGATGATGACGAGGACGAGGACGAAGAAGAGGGTCAGGATGAATATGAGAATGATGGATTTATAGTTGACGACGTTGAGGAAGAGGAGGAACAAGATGAAGAAGAGAGGGCAGAAAGCGAGGAGGAACGACAAAAGAAGAAAAAGAGGAAGAAAAAGGAAGAGTATGTTCTGGATGAAGATGATTATGAGCTTCTAGAGGACAATAATATCAATATTCACCGTAGGAAGGAGAGCAAAAAGTTTAAGCGGCTGAAAAAAGGCCAGAGGGACACTGAGGAGGAGCCCTCAGGATTATCTGATGAAGAGGAATTTGTTGGAAGCGGTAAAGGTGGTCGAACTGCTGAGGAGAAGCTTAAGCGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGATATTGCTGAAGAGGAGGAACAGGGAGAAGAGGAGGAGGATGCAGACATTGGTGAAGAAGATGAAATGGCAGACTTCATCGTGGATGAGGAGGAAGTTGATGAACACGGGGCTCCTATGAGGCGAAAGAAGCTGAAGAGAAAGAAAGCTAGGCAGGCACCGGGAGTATCTTCTTCTGCATTGCAAGAAGCTCAGGAATTATTTGGTGATGTTGATGAGTTGCTGCAGTCTCGCAAGCAAAGTCTTGAACTACGTGAATATAGAGAGACTAGACTTGAAGATGAATTTGAGCCTGTTGTCCTTTCTGAGAAATATATGACACAGAAGGATGATCAAATTAGGGAGATTGATATTCCAGAAAGAATGCAGATATCGGAGGAGAGTACTGGTTCGCCTCCACTGAATGATAATATTAGAGAAGTGGAGAGTGATTGGATACTTGATCAACTTAAAAAGGGAGTGGTACCTTGGATTTACAAGAAAGATGCTGGCAATTTACAGATTGACAAGCGTGATATCTCCAGATTTTTGGATCTGCATCATGTACAGAAATTAGACATTCCTTTTATTGCTATGTATCGGAAGGAGGAGTGCTCAAGCCTATTGAAAAATTCTGAGCAACCCGATGATGAGAATTGGGATAAAAATGAAAAGCCTCCAACTTTAAAATGGCACAAGGTACTTTGGGCAATTCAAGACTTGGACCAAAAGTGGTTGCTTCTTCAGAAACGAAAAAGTGCCCTCCAAGCCTACTATAATAAACGATTTGAAGAAGAGTCCCGTCGTGTTTATGATGAAACGAGACTTGAATTGAACCAGCAATTGTTTGAGTCAGTTATGAGATCATTGAAGGCTGCAGAAACAGAGAGAGAGGTTGACGATGTTGACTCAAAATTCAACTTGCATTTCCCTCCAGGGGAAGTTGGTGTTGATGAAGGGCAATACAAAAGACCTAAAAGGAAATCAATGTATAGTTCTTTTAGTAAGGCAGGGCTTTGGGAGGTTGCTAGCAAGTTTGGGCGTAGTGCCGAGCAACTTGGAATGATTTTATCGCTTGAAACAATGATTAACGAGTTGGAGAATCCTAAGGAGACACCAGAAGAGATGGCTTCAAATTTTACATGTGCTATGTGTGATACACCTCAAGAAGTACTTAAATATGCTAGGCACATGGCAGCTGTTGAGATTAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTACCAACTTCATTGACCATGCCGTGGTATCCACTTGTCCCACTGCTGATGGAAATGTAACTATAGATTCTTTCCATCAGTTTGCCGGGATAAAGTGGTTGCAGGAGAAGCCGTTATCTAAATTTGAGGATGCACAATGGCTCCTTATACAGAAGGCAGAGGATGAGAAACTCCTTCAAGTTACTATTAAGCTGCCTGAAGAGTATCTTGACAAGTTGATAAATGAATTCAATGATTATTACATCAGTGACAGTGTTAGTAGGTCTGCCCAACTGTGGAATGAACAGAGGAAGTTGATCCTGCATGATGCAATTTTTCGCTTTCTCTTACCATCAATGGTAAAAGAGGCAAGAGCTTATTTAACTAGTAAAGCAAAGAATTGGTTGCTCATGGAATATGGGAAGGCATTGTGGAATAAGGTTTCTTTGGGACCTTATCAACGGAAGGATAATGATCTTAGTGCTGATGATGAAGCTGCCCCTAGGGTTATGGCTTGCTGTTGGGGTCCTGGAAAGCCGCAGACAACTTTTGCTATGTTAGATTCATCAGGGGAAGTGCTAGATGTTCTTTACATTGGGTCCCTTACTTTACGGTCTCAAAGTGTTAATGACCAGCAACAGAAGAAGAATGATCAGGAGCGTGTCTTGAAGTTCATGACTGACCACCAACCACATGTTGTTGTTCTAGGAGCAGTGAATTTATCTTGTACCCGTTTGAAGGATGATATTTATGAGATAATTTTTAAAATGGTGGAGGAAAATCCTAGAGATGTTGGTCATGAGATGGATGGCCTCAGCATCGTATATGGGGATGAATCTCTTCCTCATTTGTACGAAAATTCTCGAATTTCCTCTGAACAACTTCCCTCACAGCAAGGCATAGTGAGGCGGGCTGTAGCACTTGGAAGGTATCTGCAGAATCCCTTGGCAATGGTTGCAACATTATGTGGACCTAGAAAAGAAATTTTATCATGGAAACTGAGTTCCTTGGAGAGCTTTCTCAACCCTGATGAGAAATTTGGGATGGTTGAGCAGATTATGGTAGATGTGACAAATCAAGTGGGCTTAGATGTTAATTTAGCCATAAGCCATGAGTGGTTATTCGCTCCTTTACAGTTTATTTCTGGGCTTGGTCCAAGAAAGGCTGCATCCTTACAGAGGTCCCTGGTAAGAGCTGGAGCAATTTTTACCCGGAAGGACTTTGTGACAGAGCATAAACTGGGTAGAAAGGTTTTTGTCAACGCTGTAGGTTTCCTGCGTGTTCGGAGGAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTAGATGATACAAGAATTCATCCGGAATCATATACTCTTGCACAAGAGTTGGCTAAAGATATGTATGATGCAGATGGCACAGGTGATGGAAATGATGATGATGATGCACTGGAGATGGCTATAGAGCATGTGAGAGATCGGCCTAGTTATTTGAAAAATCTTGATGTCGAGCGATATGCTAATGGGAAGAATCGGCTGAATAAAAAAGCAACTTTCTGTGACATAAAAAGAGAACTGATTCAGGGATTTCAGGATTGGCGTAAACAATATGAAGAACCAAATCAGGATGAGGAGTTTTATATGATATCGGGTGAAACTGAAGAGACCCTTGCTGAAGGGAAAATCGTCCAAGCTACAATCCGCAGAGTGCAAGCTCAAAAGGCCATATGTGTGCTTGAATCTGGGTTAACTGGAATTCTCATGAAAGAAGACTATACAGATGACTGGAGGGATTTAGTTGAGTTATCTGACAGGCTACATGAGGGTGACATTCTCACTTGCAAAATCAAATCAATTCAGAAGAATAGGTATCAGGTGTTCCTTGTTTGTAGGGAGAGTGAAATGAGAAGTAATCGTTTGCAGAGTAATCGTAATCTTGACCCATATTATTATGAAGACCGGAGCTCTCAGCAGAGCGAACAAGTCAAAGCTCGCAAAGAAAAAGAGCTTGCAAAGAAACATTTCAAGCCTAGGATGATAGTTCATCCACGTTTTCAGAACATAACCGCAGACGAAGCAATGGAGTTCTTGTCTGACAAAGATTTTGGAGAAAGTATCATCCGGCCTAGTTCACGTGGACCTTCATTTCTTACTTTAACTCTCAAAATCTACGATGGAGTTTATGCCCACAAAGATATAATTGAAGGTGGAAAGGAACACAAGGACATCACAAGCTTACTTCGAATTGGGAAGACACTTAAAATTGGAGAGGACACTTTTGAGGATTTAGATGAGGTGATGGATCGCTATGTTGATCCCTTGGTAGTGCACTTAAAGGCAATGCTTAACTATCGCAAGTTCAAGAAGGGTACAAAAGCAGAAGTTGATGAGCTTTTGAGGATGGAAAAAGCAGAGTATCCTATGCGGATAGTCTATAGTTTTGGCATCTCTCATGAACATCCAGGCACATTCATATTGACTTATATAAGAAGTACGAATCCCCACCATGAGTACATTGGGCTTTATCCAAAAGGATTCAAATTCCGGAAAAGGATGTTTGAGGACATTGATCGGCTTGTGGCATATTTCCAGAGGCACATTGATGATCCCCAGCATGATGCAGCGCCTTCCATTAGATCTGTTGCTGCTATGGTGCCAATGCGAAGCCCGGCCACTGGCGGATCCTCAGGGGCATCTGGTAGTGGTTGGGGTTCTAATGAGGGTGGCTGGAGAAGTCATGCAGGTGATAGGGATAGATCTTCTACACCTGGTTCCAGGACAGGGCGAACTGATTACAGAAACAGTGGGAATCGGGATGATCACCCCAGTGGTCTGCCTCGCCCATATGGAGGACGTGGACGAGGTCGAGGTCGAGGCTCATATAACAGTCGAGGAAACAACTCCAATAATGAAAGGGAGGATTCTGGTTTTAGTGCAGCTAGATGGGGTTCTGTCACAAAGGATGGAGACGAAGGTTTAAGCAATTTTCCAGGAGCCAAGGTTCAAAATTCCCCAGGAAGGGAAGCCTTTCCAGGTGGTTGGGGATCTGGTGGAGCCAGTGGTTGGGGTGGTGCAGGTGATGCAGAGGGTGGAGGCTCTGGCTGGTGA 4773 0.432 MAKGVVSDDEEEVELEEEEREQVDGEGMDDDEDEDEEEGQDEYENDGFIVDDVEEEEEQDEEERAESEEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDTEEEPSGLSDEEEFVGSGKGGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEEDEMADFIVDEEEVDEHGAPMRRKKLKRKKARQAPGVSSSALQEAQELFGDVDELLQSRKQSLELREYRETRLEDEFEPVVLSEKYMTQKDDQIREIDIPERMQISEESTGSPPLNDNIREVESDWILDQLKKGVVPWIYKKDAGNLQIDKRDISRFLDLHHVQKLDIPFIAMYRKEECSSLLKNSEQPDDENWDKNEKPPTLKWHKVLWAIQDLDQKWLLLQKRKSALQAYYNKRFEEESRRVYDETRLELNQQLFESVMRSLKAAETEREVDDVDSKFNLHFPPGEVGVDEGQYKRPKRKSMYSSFSKAGLWEVASKFGRSAEQLGMILSLETMINELENPKETPEEMASNFTCAMCDTPQEVLKYARHMAAVEISCEPSIRKHVRTNFIDHAVVSTCPTADGNVTIDSFHQFAGIKWLQEKPLSKFEDAQWLLIQKAEDEKLLQVTIKLPEEYLDKLINEFNDYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMVKEARAYLTSKAKNWLLMEYGKALWNKVSLGPYQRKDNDLSADDEAAPRVMACCWGPGKPQTTFAMLDSSGEVLDVLYIGSLTLRSQSVNDQQQKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPHLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSSLESFLNPDEKFGMVEQIMVDVTNQVGLDVNLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGRKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYTLAQELAKDMYDADGTGDGNDDDDALEMAIEHVRDRPSYLKNLDVERYANGKNRLNKKATFCDIKRELIQGFQDWRKQYEEPNQDEEFYMISGETEETLAEGKIVQATIRRVQAQKAICVLESGLTGILMKEDYTDDWRDLVELSDRLHEGDILTCKIKSIQKNRYQVFLVCRESEMRSNRLQSNRNLDPYYYEDRSSQQSEQVKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDFGESIIRPSSRGPSFLTLTLKIYDGVYAHKDIIEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVVHLKAMLNYRKFKKGTKAEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHDAAPSIRSVAAMVPMRSPATGGSSGASGSGWGSNEGGWRSHAGDRDRSSTPGSRTGRTDYRNSGNRDDHPSGLPRPYGGRGRGRGRGSYNSRGNNSNNEREDSGFSAARWGSVTKDGDEGLSNFPGAKVQNSPGREAFPGGWGSGGASGWGGAGDAEGGGSGW 1590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0775 1590 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 9 1486 IPR017072 GO:0032968
Lele05g0775 1590 CDD SH2_Nterm_SPT6_like 1237 1325 IPR035019 -
Lele05g0775 1590 FunFam Transcription elongation factor spt6 896 990 - -
Lele05g0775 1590 FunFam Transcription elongation factor spt6 1108 1196 - -
Lele05g0775 1590 Pfam Holliday-junction resolvase-like of SPT6 726 882 IPR028231 -
Lele05g0775 1590 SUPERFAMILY RuvA domain 2-like 1001 1090 IPR010994 -
Lele05g0775 1590 MobiDBLite consensus disorder prediction 133 155 - -
Lele05g0775 1590 MobiDBLite consensus disorder prediction 1515 1530 - -
Lele05g0775 1590 SUPERFAMILY RuvA domain 2-like 898 988 IPR010994 -
Lele05g0775 1590 SUPERFAMILY SH2 domain 1240 1326 IPR036860 -
Lele05g0775 1590 MobiDBLite consensus disorder prediction 157 192 - -
Lele05g0775 1590 SUPERFAMILY Nucleic acid-binding proteins 1110 1190 IPR012340 -
Lele05g0775 1590 FunFam Transcription elongation factor spt6 1335 1428 - -
Lele05g0775 1590 Pfam Helix-hairpin-helix motif 886 987 IPR032706 -
Lele05g0775 1590 SUPERFAMILY Ribonuclease H-like 727 882 IPR012337 -
Lele05g0775 1590 Gene3D SH2 domain 1335 1430 IPR036860 -
Lele05g0775 1590 Gene3D - 483 920 IPR023323 -
Lele05g0775 1590 FunFam Transcription elongation factor spt6 717 887 - -
Lele05g0775 1590 Coils Coil 6 26 - -
Lele05g0775 1590 FunFam Transcription elongation factor spt6 289 471 - -
Lele05g0775 1590 Coils Coil 50 82 - -
Lele05g0775 1590 MobiDBLite consensus disorder prediction 66 86 - -
Lele05g0775 1590 FunFam Transcription elongation factor Spt6 994 1088 - -
Lele05g0775 1590 Gene3D - 996 1088 IPR042066 -
Lele05g0775 1590 FunFam Transcription elongation factor spt6 1223 1334 - -
Lele05g0775 1590 MobiDBLite consensus disorder prediction 1442 1590 - -
Lele05g0775 1590 CDD SH2_Cterm_SPT6_like 1336 1422 IPR035018 -
Lele05g0775 1590 MobiDBLite consensus disorder prediction 9 65 - -
Lele05g0775 1590 Gene3D SH2 domain 1223 1333 IPR036860 -
Lele05g0775 1590 Gene3D - 256 990 - -
Lele05g0775 1590 Gene3D - 1108 1195 IPR012340 -
Lele05g0775 1590 Pfam SH2 domain 1205 1421 IPR035420 -
Lele05g0775 1590 SUPERFAMILY Tex N-terminal region-like 319 706 - -
Lele05g0775 1590 ProSiteProfiles S1 domain profile. 1115 1186 IPR003029 GO:0003676
Lele05g0775 1590 SMART rnase_8s 727 845 IPR006641 GO:0006139
Lele05g0775 1590 FunFam Transcription elongation factor spt6 474 737 - -
Lele05g0775 1590 Pfam Acidic N-terminal SPT6 29 118 IPR028083 -
Lele05g0775 1590 Gene3D - 717 1107 IPR037027 GO:0006139
Lele05g0775 1590 SMART S1_6 1113 1186 IPR022967 -
Lele05g0775 1590 MobiDBLite consensus disorder prediction 1447 1461 - -
Lele05g0775 1590 Gene3D - 288 482 IPR023319 -
Lele05g0775 1590 PIRSF Spt6 3 1489 IPR017072 GO:0032968
Lele05g0775 1590 Pfam HHH domain 1002 1089 IPR041692 -
Lele05g0775 1590 MobiDBLite consensus disorder prediction 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0775 Lele-ChrLele05 4576836 4584357 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0775 05 4576836 4584357 Lele05g0775 05 4576836 4584357 ECH
Lele05g0775 05 4576836 4584357 Lele07g0809 07 4649628 4657569 hybridization
Lele05g0775 05 4576836 4584357 Lele08g0615 08 3730873 3738315 hybridization