Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0615 ATGGCCAAAGGCGTAATCTCAGACGACGATGAGGAGGTCGAACTCGAAGAGGAGGAGAGGGAGCAAGTTGATGGAGAGGGTATGGATGATGACGAGGACGAAGAAGAGGAAGGTCAGGATGAATATGAGAATGATGGATTTATAGTTGACGACGTTGAGGAAGAGGAGGAACAAGATGAAGAAGAGAGGGCAGAAAGCGATGAGGAACGACAAAAGAAGAGAAAGAGGAAGAAAAAGGAAGGGTATGTTCTGGATGAAGATGATTATGAGCTTCTAGAGGACAATAATATCAATATTCACCGTAGGAAGGAGAGCAAAAAGTTTAAGCGGCTCAAAAAAGGCCAGAGGGACACTGAGGAGGATCCCTCGGGATTATCTGACGAGGAGGAATTTGTTGGAAGTGGTAAAGGTGGGCGAACTGCTGAGGAGAAGCTTAAGCGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGATATTGCTGAAGAGGAGGAACAGGGAGAAGAGGATGATGATGCAGACATTGGTGAAGAAGATGAAATGGCGGACTTCATTGTGGATGAGGAAGAAGTTGATGAACACGGGGCTCCTATGAGGCGAAAGAAGCTAAAGAGAAAGAAAGTTAGGCAGGCACCAGGAGTATCTTCTTCTGCATTGCAAGAAGCTCAGGAATTATTTGGTGATGTTGATGAGTTACTGCAGTCTCGCAAGCAAAGTCTGGAACTACGTGAATATAGAGAGACCAGATTAGAAGATGAATTTGAGCCTGTTGTCCTTTCTGAGAAATATATGACAGAGAAGGATGATCAAATTAGGGAGATTGATATTCCAGAAAGAATGCAGATATCAGAGGAGAGTACTGGTGCACCTCCACTGGCTACAAGTATTATAGAAGAGGAGCGTGATTGGATAGTTGAACAGCTTAAAAAGGGAGTGGTACCTTGGATTTACAAGAAAGATGCTGGCAATTTACAGATTGACGAGCATGATATCTACAAATTTTTGGAACTGCACCATGTACAGAAATTAGACGTTCTTTGGGCAATTCAAGACTTGGACCAAAAGTGGTTGCTTCTTCAGAAAAGGAAAAGTGCCCTCCAAGCCTACTATAATAAACGATTTGAAGAAGAGTCCCGTCGTGTTTATGACGAAACAAGACTTGAATTGAACCAGCAATTGTTCGAGTCAGTTATGAGATCATTGAAGGCTGCAGAAACAGAGAGAGAGGTTGACGATGTTGACTCAAAATTCAACTTGCATTTCCCTCCAGGGGAAGTTGGTGTTGATGAAGGGCAATATAAAAGACCTAAAAGGAAATCAATGTATAGTTCTTTTAGTAAGGCAGGGCTTTGGGAGGTTGCTAGCAAGTTTGGGCGTAGTGCCGAGCAACTTGGAATGATTTTATCACTTGAAACAATGTTGGAGAATCCTAAGGAAACACCAGAAGAGATGGCTTCAAATTTTACATGTGCTATGTGTGATACACCTGAAGAAGTACTTAAATATTCTAGGCACATGGCAGCTGTTGAGATTAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTACCAACTTCATTGACCATGCTGTAGTATCTACTTGTCCCACTGCCGATGGAAATGTAACTATAGATTCTTTCCATCAGTTTGCCGGGATAAAGTGGTTGCGGGAGAAGCCATTATCTAAATTTGAGGATGCACAATGGCTCCTTATACAGAAGGCAGAGGAGGAGAAACTCCTTCAAGTTACTATTAAGCTGCCTGAAGAGTATCTTGGCAAGTTGACAAATGAATTCAATGATTATTACATCAGTGACAGTGTTAGTAGGTCTGCCCAACTGTGGAATGAACAGAGGAAGTTGATCCTGCATGATGCAATTTTTCGCTTTCTCTTACCATCAATGGAAAAAGAGGCAAGAGCTTATTTAATGAGTAAAGCAAAGAATTGGGTACTCGGGGAATATGGGAAGGCATTGTGGAATAAGGTTTCTTTGGGACCTTATCAACGGAAGGATAATGATCTTAGTGCTGATGATGAAGGTGCTCCTAGGGTTATGGCTTGCTGTTGGGGTCCTGGAAAGCCGCAGACAACTTTTGTTATGTTGGATTCATCAGGGGAAGTGCTAGATGTTCTTTACACTGGGTCCCTTACTTTATGGTCTCAAAATGTTAATGACCAGCAACGAAAAAAGAATGATCAGGAGCGTGTCTTGAAGTTCATGACAGACCACCAACCTCATGTTGTTGTTCTAGGAGCAGTGAATTTGTCTTGTACTCGTTTGAAGGATGATATTTATGAGATAATTTTTAAAATGGTGGAGGAAAATCCTAGAGATGTTGGTCATGAGATGGATGGCCTCAGCATTGTGTATGGGGATGAGTCTCTCCCACATTTGTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCCTCACAGCAAGGCATAGTGAGGCGGGCTGTAGCACTTGGAAGGTATCTGCAGAATCCCTTGGCAATGGTTGCAACATTATGTGGACCTAGAAAAGAAATTTTATCATGGAAACTGAGTTCCTTGGAGAGCTTTCTCAACCCTGATGAGAAATTTGGGATGGTAGAGCAGATTATGGTAGATGTGACAAATCAGGTGGGCTTAGATGTTAATTTAGCCATAAGCCATGAGTGGTTATTCGCTCCTTTACAGTTTATTTCTGGGCTTGGTCCAAGAAAGGCGGCATCCTTACAGAGGTCCCTGGTAAGAGGTGGAGCAATATTTACCCGGAAGGACTTTGTGACAGAGCATAAACTGGGTAAAAAAGTTTTTGTGAATGCTGTAGGTTTCTTGCGTGTTCGGAGGAGTGGATTGGCAGCTAGCAGTAGCCAATTTATTGATTTGCTAGATGATACAAGAATTCATCCGGAATCATATACTCTTGCACAAGAGTTGGCTAAAGATGTGTATGACGCAGATGGCACAGGTGATGCAAATGATGATGATGATGCACTAGAGATGGCTATAGAGCATGTGAGAGATCGGCCTAGTTATTTGAAAAACCTTGATGTTGAGAATTATGCAAGAGGGAAGCAGCGGCTGAATAAAAAAGAAACTTTCTATGACATTAGACGAGAACTGATTCAGGGATTTCAGGATTGGCGTAAACAATATGAAGAACCGAATCAGGATGAGGAGTTTTATATGATATCGGGTGAAACTGAAGAGACCCTTGCTGAAGGGAAAATTGTCCAAGCTACAATTCGCAGAGTGCAGGCTCAAAAGGCCATATGTGTGGTTGAATCTGGGTTAACTGGAATTCTCATGAAAGAAGACTATACAGATGACTGGAGGGATTTAGTCGAGTTATCTGACAGGCTCCATGAGGGTGACATTCTCACTTGCAAAATCAAATCAATTCAAAAGAATAGGTATCAGGTATTCCTTGTTTGTAGGGAGAGTGAAATGAGAAGTAATCGTTTACAGAGTAATCGTAATCTTGACCCCTATTATTATGAAGACCGGAGCTCTCAACAGAGTGAACAAGACAAAGCTCGCAAAGAAAAAGAGCTTGCAAAGAAACATTTCAAGCCTAGGATGATAGTTCATCCCCGTTTTCAGAACATAACTGCAGACGAAGCAATGGAGTTCTTGTCTGACAAAGATTTTGGAGAAAGTATAATCCGGCCTAGTTCACGTGGACCTTCATTTCTTACTTTAACTCTCAAAATCTTTGATGGAGTTTATGCCCACAAAGATATAATTGAAGGTGGAAAGGAACACAAGGACATCACAAGCTTACTTCGAATTGGGAAGACACTCAAAATTGGAGAGGACACTTTTGAGGATTTAGATGAGGTAATGGATCGCTATGTTGATCCCTTGGTAGTTCACTTGAAGGCAATGCTTAACTATCGCAAGTTCAAGAAGGGTACAAAAGCAGAAGTTGATGAACTTCTGAGGATGGAGAAAGCAGAGTATCCTATGCGGATAGTCTATAGTTTTGGCATCTCTCATGAACATCCAGGCACATTCATATTGACTTATATAAGAAGTACAAATCCCCACCATGAGTACATTGGGCTTTATCCAAAAGGATTCAAATTCCGGAAAAGGATGTTTGAGGATATTGATCGGCTTGTGGCATATTTCCAGAGGCACATTGATGATCCCCAGCACGATTCGGCGCCTTCCATTAGATCTGTTGCTGCTATGGTGCCAATGCGAAGCCCTGCCACTGGCGGATCCTCAGGGGTATCAGTGGGTAGTGGGTGGGGTTCTAATGAGGGTGGATGGAGAAGTCATGCAGATGATAGGGATCGATCTTCAACACCTGGTTCCAGGACAGGGAGAACTGATTACAGAAACAGTGGGAATCGGGATTATCATCCCAGTGGTCTGCCTCGCCCATACGGCGGTGGACGAGGTCGAGGCTCATATAATGGTCGAGGAAACAACTCCAATAATGAAAGGCAGGATTCTGGTTTTAGTGCAGCTAGATGGGGTTCGGTCACAAAGGATGGAGACGAAGGTTTAAGCAATTTTCCAGGAGCCAAGGTTCAAAATTCCCCAGGAAGGGAAGCCTTTCCTGGGGGTTGGGGATCTGGTGGAGCCAGTGGTTGGGGTGGTGCAGGTGATGCAGAGGGTGGAGGCTCTGGCTGGGGAAGTGATCTCAAGAAATCTGATGATGGATGGTCTGGGAATGCTGGTGGTGGCACTGCCTGGTGA 4698 0.4319 MAKGVISDDDEEVELEEEEREQVDGEGMDDDEDEEEEGQDEYENDGFIVDDVEEEEEQDEEERAESDEERQKKRKRKKKEGYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDTEEDPSGLSDEEEFVGSGKGGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEDDDADIGEEDEMADFIVDEEEVDEHGAPMRRKKLKRKKVRQAPGVSSSALQEAQELFGDVDELLQSRKQSLELREYRETRLEDEFEPVVLSEKYMTEKDDQIREIDIPERMQISEESTGAPPLATSIIEEERDWIVEQLKKGVVPWIYKKDAGNLQIDEHDIYKFLELHHVQKLDVLWAIQDLDQKWLLLQKRKSALQAYYNKRFEEESRRVYDETRLELNQQLFESVMRSLKAAETEREVDDVDSKFNLHFPPGEVGVDEGQYKRPKRKSMYSSFSKAGLWEVASKFGRSAEQLGMILSLETMLENPKETPEEMASNFTCAMCDTPEEVLKYSRHMAAVEISCEPSIRKHVRTNFIDHAVVSTCPTADGNVTIDSFHQFAGIKWLREKPLSKFEDAQWLLIQKAEEEKLLQVTIKLPEEYLGKLTNEFNDYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARAYLMSKAKNWVLGEYGKALWNKVSLGPYQRKDNDLSADDEGAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLWSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPHLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSSLESFLNPDEKFGMVEQIMVDVTNQVGLDVNLAISHEWLFAPLQFISGLGPRKAASLQRSLVRGGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYTLAQELAKDVYDADGTGDANDDDDALEMAIEHVRDRPSYLKNLDVENYARGKQRLNKKETFYDIRRELIQGFQDWRKQYEEPNQDEEFYMISGETEETLAEGKIVQATIRRVQAQKAICVVESGLTGILMKEDYTDDWRDLVELSDRLHEGDILTCKIKSIQKNRYQVFLVCRESEMRSNRLQSNRNLDPYYYEDRSSQQSEQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDFGESIIRPSSRGPSFLTLTLKIFDGVYAHKDIIEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVVHLKAMLNYRKFKKGTKAEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPATGGSSGVSVGSGWGSNEGGWRSHADDRDRSSTPGSRTGRTDYRNSGNRDYHPSGLPRPYGGGRGRGSYNGRGNNSNNERQDSGFSAARWGSVTKDGDEGLSNFPGAKVQNSPGREAFPGGWGSGGASGWGGAGDAEGGGSGWGSDLKKSDDGWSGNAGGGTAW 1565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0615 1565 SMART S1_6 1069 1142 IPR022967 -
Lele08g0615 1565 MobiDBLite consensus disorder prediction 1158 1179 - -
Lele08g0615 1565 FunFam Transcription elongation factor spt6 673 843 - -
Lele08g0615 1565 SUPERFAMILY Tex N-terminal region-like 324 662 - -
Lele08g0615 1565 SUPERFAMILY Nucleic acid-binding proteins 1066 1146 IPR012340 -
Lele08g0615 1565 Coils Coil 49 76 - -
Lele08g0615 1565 CDD SH2_Cterm_SPT6_like 1292 1378 IPR035018 -
Lele08g0615 1565 FunFam Transcription elongation factor spt6 852 946 - -
Lele08g0615 1565 FunFam Transcription elongation factor spt6 1064 1152 - -
Lele08g0615 1565 Pfam Acidic N-terminal SPT6 29 117 IPR028083 -
Lele08g0615 1565 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 9 1443 IPR017072 GO:0032968
Lele08g0615 1565 Gene3D - 1064 1151 IPR012340 -
Lele08g0615 1565 MobiDBLite consensus disorder prediction 1 217 - -
Lele08g0615 1565 Pfam HHH domain 958 1045 IPR041692 -
Lele08g0615 1565 Pfam SH2 domain 1161 1377 IPR035420 -
Lele08g0615 1565 SUPERFAMILY RuvA domain 2-like 854 944 IPR010994 -
Lele08g0615 1565 SUPERFAMILY Ribonuclease H-like 682 838 IPR012337 -
Lele08g0615 1565 MobiDBLite consensus disorder prediction 1422 1436 - -
Lele08g0615 1565 FunFam Transcription elongation factor spt6 1179 1290 - -
Lele08g0615 1565 MobiDBLite consensus disorder prediction 132 154 - -
Lele08g0615 1565 FunFam Transcription elongation factor spt6 433 690 - -
Lele08g0615 1565 FunFam Transcription elongation factor Spt6 950 1044 - -
Lele08g0615 1565 MobiDBLite consensus disorder prediction 1470 1489 - -
Lele08g0615 1565 Gene3D SH2 domain 1291 1387 IPR036860 -
Lele08g0615 1565 Gene3D - 877 946 - -
Lele08g0615 1565 PIRSF Spt6 3 1446 IPR017072 GO:0032968
Lele08g0615 1565 Gene3D - 442 876 IPR023323 -
Lele08g0615 1565 CDD SH2_Nterm_SPT6_like 1193 1281 IPR035019 -
Lele08g0615 1565 Pfam Helix-hairpin-helix motif 842 943 IPR032706 -
Lele08g0615 1565 Gene3D - 316 441 IPR023319 -
Lele08g0615 1565 ProSiteProfiles S1 domain profile. 1071 1142 IPR003029 GO:0003676
Lele08g0615 1565 MobiDBLite consensus disorder prediction 9 64 - -
Lele08g0615 1565 FunFam Transcription elongation factor spt6 1291 1384 - -
Lele08g0615 1565 Gene3D - 673 1063 IPR037027 GO:0006139
Lele08g0615 1565 SUPERFAMILY RuvA domain 2-like 957 1046 IPR010994 -
Lele08g0615 1565 SMART rnase_8s 683 801 IPR006641 GO:0006139
Lele08g0615 1565 Pfam Holliday-junction resolvase-like of SPT6 682 838 IPR028231 -
Lele08g0615 1565 MobiDBLite consensus disorder prediction 1400 1565 - -
Lele08g0615 1565 Gene3D SH2 domain 1179 1289 IPR036860 -
Lele08g0615 1565 MobiDBLite consensus disorder prediction 65 85 - -
Lele08g0615 1565 MobiDBLite consensus disorder prediction 156 191 - -
Lele08g0615 1565 SUPERFAMILY SH2 domain 1196 1282 IPR036860 -
Lele08g0615 1565 Gene3D - 952 1044 IPR042066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0615 Lele-ChrLele08 3730873 3738315 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0615 08 3730873 3738315 Lele08g0615 08 3730873 3738315 ECH
Lele05g0775 05 4576836 4584357 Lele08g0615 08 3730873 3738315 hybridization
Lele06g0615 06 3688251 3695667 Lele08g0615 08 3730873 3738315 hybridization