Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0809 ATGGCCAAAGGCGTAGTCTCAGACGACGAAGAGGAGGTTGAACTCGAAGAGGAGGAGAGGGAGCAAGTTGATGGAGAGGGTATGGATGATGACGAGGACGAGGACGAAGAAGAGGAAGGTCAGGATGAATATGAGAATGATGGATTTATAGTTGACGACGTTGAGGAAGAGGAGGAACAAGATGAAGAAGAGAGGGCAGAAAGCGATGAGGAACGACAAAAGAAGAAAAAGAGGAAGAAAAAGGAAGAGTATGTTCTGGATGAAGATGATTATGAGCTTCTAGAGGACAATAATATCAATATTCACCGTAGGAAGGAGAGCAAAAAGTTTAAACGGCTGAAAAAAGGCCAGAGGGACACTGAGGAGGAGCCCTCGGGATTATCTGATGAAGAGGAATTTGTTGGAAGCGGCAAAGGTGGGCGAACTGCTGAGGAGAAGCTTAAGCGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGATATTGCTGAAGAGGAGGAACAAGGAGAAGAGGAGGAGGATGCAGACATTGGTGAAGAAGATGAAATGGCGGACTTCATCGTGGACGAGGAGGAAGTTGATGAACACGGGGCTCCTATGAGGCGAAAGAAGCTGAAGAGAAAGAAAGTTAGGCAGGCACCGGGAGTATCTTCTTCTGCATTGCAAGAAGCTCAGGAATTATTTGGTGATGTTGATGAGTTGCTGCAGTCTCGCAAGCAAAGTCTTGAACTACGTGAATATAGAGAGACTAGACTTGAAGATGAATTTGAGCCTGTTGTCCTTTCTGAGAAATATATGACACAGAAGGATGATCAAATTAGGGAGATTGATATTCCAGAAAGAATGCAGATATCAGAGGAGAGTACTGGTGCGCCTCCACTGAATGATAATATTAGAGAAGTGGAGAGTGATTGGATACTTGATCAGCTTAAAAAGGAAGTGGTACCTTGGATTTACAAGAAAGATGCTGGCAATTTACAGATTGACAAGCGTGACATCTCCAGATTTTTGGATCTGCATCATGTACAGAAATTAGACATTCCTTTTATTGCTATGTATCGGAAGGAGGAGTGCTCAAGCCTATTGAAAAATCCTGAGCAACCCGATGATGAGAATTGGGATAAAAATGAAAAGCCTCCAACTTTAAAATGGCACAAGGTACTTTGGGCAATTCAAGACTTGGACCAAAAGTGGTTGCTTCTTCAGAAACGAAAAAGTGCCCTCCAAGCCTACTATAATAAACGATTTGAAGAAGAATCCCGTCGTGTTTATGATGAAACGAGACTTGAATTGAACCAGCAATTGTTCGAGTCAGTTATGAGATCATTGAAGGCTGCAGAAACAGAGAGAGAGGTTGACGATGTTGACTCAAAATTCAACTTGCATTTCCCTCCAGGGGAAGTTGGTGTTGATGAAGGGCAGTACAAAAGACCTAAGAGGAAATCAATGTATAGTTCTTTTAGTAAAGCAGGGCTTTGGGAGGTTGCTAGCAAGTTTGGGCGTAGTGCCGAGCAACTTGGAATGATTTTATCACTTGAAACAATGATTAACGAGTTGGAGAATCCTAAGGAAACACCAGAAGAGATGGCTTCAAATTTTACATGTGCTATGTGTGATACACCTCAAGAAGTACTTAAATATGCTAGGCACATGGCAGCTGTTGAGATTAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTACCAACTTCATTGACCATGCTGTGCTATCAACTTGTCCCACTGCTGATGGAAATGTAACTATAGATTCTTTCCATCAGTTTGCCGGGATAAAGTGGTTGCGAGAGAAGCCATTATCTAAATTTGAGGATGCACAATGGCTCCTTATACAGAAGGCAGAGGATGAGAAACTCCTTCAAGTTACTATTAAGCTTCCTGAAGAGTATCTTGACAAGTTGACAAATGAATTCAATGATTATTACATCAGTGACAGTGTTAGTAGGTCTGCCCAACTGTGGAATGAACAGAGGAAGTTGATCCTGCATGATGCAATTTTTCGTTTTCTCTTACCATCAATGGTAAAAGAGGCAAGAGCTTATTTAACGAGTAAAGCAAAGAATTGGTTGCTTATGGAGTATGGGAAGGCATTGTGGAATAAGGTTTCTTTGGGACCTTATCAACGGAAGGATAATGATCTTAGTGCTGATGATGAAGCTGCCCCTAGGGTTATGGCTTGCTGTTGGGGTCCTGGAAAGCCGCAGACAACTTTTGTTATGTTAGATTCATCAGGGGAAGTGCTAGATGTTCTTTACATTAGGTCCCTTACTTTACGGTCTCAAAATGTTAATGACCAGCAACAGAAGAAGAATGATCAGGAGCGTGTCTTGAAGTTCATGACAGACCACCAACCGCATGTTGTTGTTCTAGGAGCAGTGAATTTGTCTTGTACTCGTTTGAAGGATGATATTTATGAGATAATTTTTAAAATGGTGGAGGAAAATCCTAGAGATGTTGGTCATGAGATGGATGGCCTCAGCATCGTGTATGGGGATGAATCTCTTCCACATTTGTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCCTCACAGCAAGGCATAGTGAGGCGGGCTGTAGCACTTGGAAGGTATCTGCAGAATCCCTTGGCAATGGTTGCAACATTATGTGGACCTAGAAAAGAAATTTTATCATGGAAACTGAGTTCCTTGGAGAGCTTTCTCAACCCTGACGAGAAATTTGGGATGATTGAGCAGATTATGGTAGATGTGACAAATCAGGTGGGCTTAGATGTTAATTTAGCCATAAGCCATGAGTGGTTATTCGCTCCTTTACAGTTTATTTCTGGGCTTGGTCCAAGAAAGGCTGCATCCTTACAGAGGTCCCTGGTAAGAGCTGGAGCAATTTTTACCCGGAAGGACTTTGTGACAGAGCATAAACTGGGTAGAAAGGTTTTTGTCAATGCTGTAGGTTTCCTGCGTGTTCGGAGGAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTAGATGATACAAGAATTCATCCGGAATCATATACTCTTGCACAAGAGTTGGCTAAAGATATGTATGATGCAGATGGCACAGGTGATGGAAATGATGATGATGATGCACTGGAGATGGCTATAGAGCATGTGAGAGATCGGCCTAGTTATTTGAAAAACCTTGATGTCGAGCGTTATGCTAATGGGAAGAATCGGCTGAATAAAAAAACAACTTTCTGTGACATAAAAAGAGAACTGATTCAGGGATTTCAGGATTGGCGTAAACAATATGAAGAACCAAATCAAGATGAGGAGTTTTATATGATATCGGGTGAAACTGAAGGGACCCTTGCTGAAGGAAAAAATGTCCAAGCTACAATCCGCAGAGTGCAAGCTCAAAAGGCCATATGTGTGCTTGAATCTGGGTTAACTGGAATTCTCATGAAAGAAGACTATACAGATGACTGGAGGGATTTAGTTGAGTTATCTGACAGGCTACATGAGGGTGACATTCTCACTTGCAAAATCAAATCAATTCAGAGGAATAGGTATCAGGTATTCCTTGTTTGTAGGGAGAGTGAAATGAGAAGTAATCGTTTGCAGAGTAATCGTAATCTTGACCCATATTATTATGAAGACCGGAGCTCTCAGCAGAGTGAACAAGACAAAGCTCGCAAAGAAAAAGAGCTTGCAAAGAAACATTTCAAGCCTAGGATGATAGTTCATCCACGTTTTCAGAACATAACCGCAGACGAAGCAATGGAGTTCTTGTCTGACAAAGATTTTGGAGAAAGTATAATCCGGCCTAGTTCACGTGGACCTTCATTTCTTACTTTAACTCTCAAAATCTACGATGGAGTTTATGCCCACAAAGATATAATTGAAGGTGGAAAGGAACACAAGGACATCACAAGCTTACTTCGAATTGGGAAGACACTTAAAATTGGAGAGGACACTTTTGAGGATTTAGACGAGGTGATGGATCGCTATGTTGATCCCTTGGTAGTGCACTTAAAGGCAATGCTTAACTACCGCAAGTTCAAGAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAGGATGGAGAAAGCAGAGTATCCTATGCGAATAGTCTATAGTTTTGGCATCTCTCATGAACATCCAGGCACATTCATATTGACTTATATAAGAAGTACGAATCCCCACCATGAGTATATTGGGCTTTATCCAAAAGGATTCAAATTCCGGAAAAGGATGTTTGAGGACATTGATAGGCTTGTGGCATATTTCCAGAGGCACATTGATGATCCCCAGCATGATGCAGCTCCTTCCATTAGATCTGTTGCTGCTATGGTGCCAATGCGAAGCCCAGCCACTGGCGGATCCTCAGGGGCATTGGGTAGTGGTTGGGGTTCTAATGAGGGTGGCTGGAGAAGTCATGCAGGTGATAGGGATAGATCTTCTACACCTGGTTCCAGGACAGGGCAAACTGATTACAGTAACAGTGGGAATCGGGATGATCACCCCAGTGGTCTGCCTCGCCCATATGGCAGCGGACGTGGACGTGGTCGAGGCTCATATAACAGTCGAGGAAACAACTCCAATAATGAAAGGCAGGATTCTGTTTTTAGCGCAGCTAGATGGGGTTCTGTCACAAAGGATGGAGACGAAGGTTTAAGCAATTTTCCAGGAGCCAAGGTTCAAAATTCCCCAGGAAGGGAAGCCTTTCCTGGTGGTTGGGGATCTGGTGGAGCCAGTGGTTGGGGTGGTGCAGGTGATGTAGAGGGTGGAGGCTCTGGCTGGGGAAGTGGTCTCAAGAAATCTGATAATGGATGGGGGTCTGGGAATGCTGGTGGCGGCACTGCCTGGTGA 4839 0.4311 MAKGVVSDDEEEVELEEEEREQVDGEGMDDDEDEDEEEEGQDEYENDGFIVDDVEEEEEQDEEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDTEEEPSGLSDEEEFVGSGKGGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEEDEMADFIVDEEEVDEHGAPMRRKKLKRKKVRQAPGVSSSALQEAQELFGDVDELLQSRKQSLELREYRETRLEDEFEPVVLSEKYMTQKDDQIREIDIPERMQISEESTGAPPLNDNIREVESDWILDQLKKEVVPWIYKKDAGNLQIDKRDISRFLDLHHVQKLDIPFIAMYRKEECSSLLKNPEQPDDENWDKNEKPPTLKWHKVLWAIQDLDQKWLLLQKRKSALQAYYNKRFEEESRRVYDETRLELNQQLFESVMRSLKAAETEREVDDVDSKFNLHFPPGEVGVDEGQYKRPKRKSMYSSFSKAGLWEVASKFGRSAEQLGMILSLETMINELENPKETPEEMASNFTCAMCDTPQEVLKYARHMAAVEISCEPSIRKHVRTNFIDHAVLSTCPTADGNVTIDSFHQFAGIKWLREKPLSKFEDAQWLLIQKAEDEKLLQVTIKLPEEYLDKLTNEFNDYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMVKEARAYLTSKAKNWLLMEYGKALWNKVSLGPYQRKDNDLSADDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYIRSLTLRSQNVNDQQQKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPHLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSSLESFLNPDEKFGMIEQIMVDVTNQVGLDVNLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGRKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYTLAQELAKDMYDADGTGDGNDDDDALEMAIEHVRDRPSYLKNLDVERYANGKNRLNKKTTFCDIKRELIQGFQDWRKQYEEPNQDEEFYMISGETEGTLAEGKNVQATIRRVQAQKAICVLESGLTGILMKEDYTDDWRDLVELSDRLHEGDILTCKIKSIQRNRYQVFLVCRESEMRSNRLQSNRNLDPYYYEDRSSQQSEQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDFGESIIRPSSRGPSFLTLTLKIYDGVYAHKDIIEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVVHLKAMLNYRKFKKGTKAEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHDAAPSIRSVAAMVPMRSPATGGSSGALGSGWGSNEGGWRSHAGDRDRSSTPGSRTGQTDYSNSGNRDDHPSGLPRPYGSGRGRGRGSYNSRGNNSNNERQDSVFSAARWGSVTKDGDEGLSNFPGAKVQNSPGREAFPGGWGSGGASGWGGAGDVEGGGSGWGSGLKKSDNGWGSGNAGGGTAW 1612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0809 1612 FunFam Transcription elongation factor spt6 290 472 - -
Lele07g0809 1612 SUPERFAMILY Nucleic acid-binding proteins 1112 1191 IPR012340 -
Lele07g0809 1612 Gene3D SH2 domain 1336 1431 IPR036860 -
Lele07g0809 1612 Coils Coil 51 83 - -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 158 193 - -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 67 87 - -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 1 89 - -
Lele07g0809 1612 Pfam Acidic N-terminal SPT6 30 119 IPR028083 -
Lele07g0809 1612 Gene3D - 257 991 - -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 1514 1535 - -
Lele07g0809 1612 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 9 1489 IPR017072 GO:0032968
Lele07g0809 1612 SUPERFAMILY Ribonuclease H-like 728 883 IPR012337 -
Lele07g0809 1612 FunFam Transcription elongation factor spt6 897 991 - -
Lele07g0809 1612 SMART rnase_8s 728 846 IPR006641 GO:0006139
Lele07g0809 1612 Gene3D - 290 483 IPR023319 -
Lele07g0809 1612 SUPERFAMILY RuvA domain 2-like 1002 1091 IPR010994 -
Lele07g0809 1612 FunFam Transcription elongation factor spt6 1336 1429 - -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 107 220 - -
Lele07g0809 1612 SUPERFAMILY Tex N-terminal region-like 319 707 - -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 9 66 - -
Lele07g0809 1612 PIRSF Spt6 3 1490 IPR017072 GO:0032968
Lele07g0809 1612 Gene3D SH2 domain 1224 1334 IPR036860 -
Lele07g0809 1612 SUPERFAMILY RuvA domain 2-like 899 989 IPR010994 -
Lele07g0809 1612 Coils Coil 6 26 - -
Lele07g0809 1612 FunFam Transcription elongation factor spt6 1224 1335 - -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 134 156 - -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 1445 1612 - -
Lele07g0809 1612 Pfam Helix-hairpin-helix motif 887 988 IPR032706 -
Lele07g0809 1612 CDD SH2_Nterm_SPT6_like 1238 1326 IPR035019 -
Lele07g0809 1612 FunFam Transcription elongation factor spt6 718 888 - -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 1477 1496 - -
Lele07g0809 1612 Gene3D - 997 1089 IPR042066 -
Lele07g0809 1612 Gene3D - 484 921 IPR023323 -
Lele07g0809 1612 Gene3D - 718 1108 IPR037027 GO:0006139
Lele07g0809 1612 SMART S1_6 1114 1187 IPR022967 -
Lele07g0809 1612 MobiDBLite consensus disorder prediction 1202 1224 - -
Lele07g0809 1612 Gene3D - 1109 1196 IPR012340 -
Lele07g0809 1612 SUPERFAMILY SH2 domain 1241 1327 IPR036860 -
Lele07g0809 1612 Pfam Holliday-junction resolvase-like of SPT6 727 883 IPR028231 -
Lele07g0809 1612 FunFam Transcription elongation factor spt6 475 739 - -
Lele07g0809 1612 ProSiteProfiles S1 domain profile. 1116 1187 IPR003029 GO:0003676
Lele07g0809 1612 Pfam SH2 domain 1206 1422 IPR035420 -
Lele07g0809 1612 Pfam HHH domain 1003 1090 IPR041692 -
Lele07g0809 1612 FunFam Transcription elongation factor spt6 1109 1197 - -
Lele07g0809 1612 FunFam Transcription elongation factor Spt6 995 1089 - -
Lele07g0809 1612 CDD SH2_Cterm_SPT6_like 1337 1423 IPR035018 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0809 Lele-ChrLele07 4649628 4657569 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0809 07 4649628 4657569 Lele07g0809 07 4649628 4657569 ECH
Lele05g0775 05 4576836 4584357 Lele07g0809 07 4649628 4657569 hybridization
Lele06g0615 06 3688251 3695667 Lele07g0809 07 4649628 4657569 hybridization