Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0608 ATGATTGGAGAAAGAATAAAAGAGTATCCCGTCGATCAGTCTGCTTGGTTGCAGGGGTATGCAGATTCTGAGGGAATAGTTTTGGTCCAAAGCTGGTGGTACCGTCTTGTATACGAATTATTGAACTGGTTGACAAAAAATCAGATGCCGGACGAAGACTTGGCGGAGCTTAAGTTCCGTATCTATGATGGGTCAGATATTGGGCCCTTCCGTTACTCGCCAGCTTCTACTGTAGCCATGCTAAAGGAAAGAATTGTTGCAGAATGGCCAAAAGATAAGAAGATTATACCGAAGGAAGCTAATGACATAAAACTCATAAACGCTGGAAAAATTTTGGAAAATGACAAGACAGTTGGTCAATGTAAAGCCCCTTTTGGCGAGCTTCCTAGAGGGGTTATCACCATGCACGTTGTCGTCCAGCCATCTCTGGCAAAAGCCAAAGCAGAGAAAGATGTTGATGAGGTCCCTAGAAAACACATATGTGGATGTTCAATATTGTGA 501 0.4311 MIGERIKEYPVDQSAWLQGYADSEGIVLVQSWWYRLVYELLNWLTKNQMPDEDLAELKFRIYDGSDIGPFRYSPASTVAMLKERIVAEWPKDKKIIPKEANDIKLINAGKILENDKTVGQCKAPFGELPRGVITMHVVVQPSLAKAKAEKDVDEVPRKHICGCSIL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0608 166 Gene3D - 42 148 - -
Lele05g0608 166 Pfam Ubiquitin-2 like Rad60 SUMO-like 55 164 IPR039540 -
Lele05g0608 166 CDD Ubl_MUBs_plant 54 141 - -
Lele05g0608 166 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 49 165 IPR040015 -
Lele05g0608 166 ProSiteProfiles Ubiquitin domain profile. 55 121 IPR000626 GO:0005515
Lele05g0608 166 SUPERFAMILY Ubiquitin-like 49 143 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0608 Lele-ChrLele05 3571729 3575957 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0608 05 3571729 3575957 Lele05g0608 05 3571729 3575957 ECH
Lele05g0608 05 3571729 3575957 Lele06g0425 06 2609953 2610780 ECH
Lele05g0608 05 3571729 3575957 Lele07g0637 07 3631007 3635394 hybridization
Lele05g0608 05 3571729 3575957 Lele08g0436 08 2664451 2667359 hybridization